FRIM - Fruit Integrative Modelling (doi:10.15454/95JUTK)

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Document Description

Citation

Title:

FRIM - Fruit Integrative Modelling

Identification Number:

doi:10.15454/95JUTK

Distributor:

Portail Data INRAE

Date of Distribution:

2018-10-08

Version:

6

Bibliographic Citation:

Bénard, Camille; Biais, Benoit; Ballias, Patricia; Beauvoit, Bertrand; Bernillon, Stéphane; Cabasson, Cécile; Colombié, Sophie; Deborde, Catherine; Gaillard, Pierre; Génard, Michel; Gibon, Yves; Jacob, Daniel; Maucourt, Mickael; Moing, Annick; Vercambre, Gilles, 2018, "FRIM - Fruit Integrative Modelling", https://doi.org/10.15454/95JUTK, Portail Data INRAE, V6

Study Description

Citation

Title:

FRIM - Fruit Integrative Modelling

Identification Number:

doi:10.15454/95JUTK

Authoring Entity:

Bénard, Camille (INRA - Institut National de la Recherche Agronomique)

Biais, Benoit (INRA - Institut National de la Recherche Agronomique)

Ballias, Patricia (INRA - Institut National de la Recherche Agronomique)

Beauvoit, Bertrand (INRA - Institut National de la Recherche Agronomique)

Bernillon, Stéphane (INRA - Institut National de la Recherche Agronomique)

Cabasson, Cécile (INRA - Institut National de la Recherche Agronomique)

Colombié, Sophie (INRA - Institut National de la Recherche Agronomique)

Deborde, Catherine (INRA - Institut National de la Recherche Agronomique)

Gaillard, Pierre (Invenio - Ste Livrade, France)

Génard, Michel (INRA - Institut National de la Recherche Agronomique)

Gibon, Yves (INRA - Institut National de la Recherche Agronomique)

Jacob, Daniel (INRA - Institut National de la Recherche Agronomique)

Maucourt, Mickael (INRA - Institut National de la Recherche Agronomique)

Moing, Annick (INRA - Institut National de la Recherche Agronomique)

Vercambre, Gilles (INRA - Institut National de la Recherche Agronomique)

Producer:

INRA UMR 1332 BFP - Metabolism Team

Date of Production:

2010

Grant Number:

ANR-09-SYSB-003

Distributor:

Portail Data INRAE

Access Authority:

Jacob, Daniel

Depositor:

Jacob, Daniel

Date of Deposit:

2018-10-08

Study Scope

Keywords:

Computer science, Information management, Omics, Plant Health and Pathology, tomato, fruit, fruit development stage, Experimental measurement

Abstract:

The project aimed to build a virtual tomato fruit that enables the prediction of metabolite levels given genetic and environmental inputs, by an iterative process between laboratories which combine expertise in fruit biology, ecophysiology, theoretical and experimental biochemistry, and biotechnology.

Kind of Data:

Dataset

Methodology and Processing

Sources Statement

Data Access

Notes:

<img src="https://www.etalab.gouv.fr/wp-content/uploads/2011/10/licence-ouverte-open-licence.gif" alt="Licence Ouverte" height="100"><a href="https://www.etalab.gouv.fr/licence-ouverte-open-licence">Licence Ouverte / Open Licence Version 2.0</a> compatible CC BY

Other Study Description Materials

Related Publications

Citation

Identification Number:

10.1104/pp.113.231241

Bibliographic Citation:

Biais B, Bénard C, Beauvoit B, Colombié S, Prodhomme D, Ménard G, Bernillon S, Gehl B, Gautier H, Ballias P, Mazat J-P, Sweetlove L, Génard M, Gibon Y. 2014. Remarkable reproducibility of enzyme activity profiles in tomato fruits grown under contrasting environments provides a roadmap for studies of fruit metabolism. Plant Physiology 164, 1204-1221.

Citation

Identification Number:

10.1105/tpc.114.127761

Bibliographic Citation:

Beauvoit B., Colombié S., Monier A., Andrieu M.-H., Biais B., Bénard C., Chéniclet C., Dieuaide-Noubhani M., Nazaret C., Mazat J.-P., Gibon Y. (2014). Model-assisted analysis of sugar metabolism throughout tomato fruit development reveals enzyme and carrier properties in relation to vacuole expansion. Plant Cell 26: 3224–3242

Citation

Identification Number:

10.1093/jxb/erv151

Bibliographic Citation:

Bénard C., Bernillon S., Biais B., Osorio S., Maucourt M., Ballias P., Deborde C., Colombié S., Cabasson C., Jacob D., Vercambre G., Gautier H., Rolin D., Génard M., Fernie A., Gibon Y., Moing A. 2015 Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships. Journal of Experimental Botany Vol. 66, No. 11 pp. 3391–3404

Citation

Identification Number:

10.1111/tpj.12685

Bibliographic Citation:

Colombié S, Nazaret, Bénard C, Biais B, Mengin V, Solé M, Fouillen L, Dieuaide- Noubhani M, Mazat J, Beauvoit B, Gibon Y. 2015. Modelling central metabolic fluxes by constraint-based optimization reveals metabolic reprogramming of developing tomato fruit. The Plant Journal 81, 24-39.

Citation

Identification Number:

10.1104/pp.19.00086

Bibliographic Citation:

Isma Belouah, Christine Nazaret, Pierre Pétriacq, Sylvain Prigent, Camille Bénard, Virginie Mengin, Mélisande Blein-Nicolas, Alisandra K. Denton, Thierry Balliau, Ségolène Augé, Olivier Bouchez, Jean-Pierre Mazat, Mark Stitt, Björn Usadel, Michel Zivy, Bertrand Beauvoit, Yves Gibon, Sophie Colombié. 2019. Modeling Protein Destiny in Developing Fruit. Plant Physiology 180, 1709–1724

Citation

Identification Number:

10.17504/protocols.io.betcjeiw

Bibliographic Citation:

Daniel Jacob (2020) Data Preparation Protocol for ODAM Compliance. protocols.io

Citation

Bibliographic Citation:

Daniel Jacob. Modeling the growth of tomato fruits based on enzyme activity profiles.. 2020. ⟨hal-02611223⟩

Other Study-Related Materials

Label:

datapackage.json

Text:

ODAM datapackage based on JSON Schema

Notes:

application/json

Other Study-Related Materials

Label:

frim1.zip

Text:

ODAM dataset files (TSV format)

Notes:

application/zip

Other Study-Related Materials

Label:

README.txt

Text:

How to get data and metadata

Notes:

text/plain