Enriched gene ontology terms in upregulated genes at the transition from eggs to J2 (doi:10.15454/NOT2LH)

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Part 2: Study Description
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Document Description

Citation

Title:

Enriched gene ontology terms in upregulated genes at the transition from eggs to J2

Identification Number:

doi:10.15454/NOT2LH

Distributor:

Portail Data INRAE

Date of Distribution:

2021-04-26

Version:

1

Bibliographic Citation:

Danchin, Etienne; Pere, Arthur, 2021, "Enriched gene ontology terms in upregulated genes at the transition from eggs to J2", https://doi.org/10.15454/NOT2LH, Portail Data INRAE, V1

Study Description

Citation

Title:

Enriched gene ontology terms in upregulated genes at the transition from eggs to J2

Identification Number:

doi:10.15454/NOT2LH

Authoring Entity:

Danchin, Etienne (INRA - Institut National de la Recherche Agronomique)

Pere, Arthur (INRAE)

Distributor:

Portail Data INRAE

Access Authority:

Danchin, Etienne

Depositor:

Danchin, Etienne

Date of Deposit:

2020-11-23

Study Scope

Keywords:

Plant Health and Pathology

Abstract:

Analysis of differentially represented (over and under) Gene Ontology (GO) terms in the genes showing significant up-regulation at the transition between the eggs and the pre-parasitic J2 stage. GO over and under representation of terms are according to the hypergeometric test as implemented in the GofuncR Bioconductor package (https://www.bioconductor.org/packages/release/bioc/html/GOfuncR.html). Results are separated by:<p> - Molecular Function<p> - Biological Process<p> - Cellular Component<p> And, in each ontology, under, over and all differentially expressed GO terms are given. <p> All the files are in table separated values format, with the last common providing the accession numbers of proteins annotated with the GO term under consideration.

Kind of Data:

Dataset

Kind of Data:

Text

Methodology and Processing

Sources Statement

Data Access

Notes:

<img src="https://www.etalab.gouv.fr/wp-content/uploads/2011/10/licence-ouverte-open-licence.gif" alt="Licence Ouverte" height="100"><a href="https://www.etalab.gouv.fr/licence-ouverte-open-licence">Licence Ouverte / Open Licence Version 2.0</a> compatible CC BY

Other Study Description Materials

Other Study-Related Materials

Label:

res_up_J2vsW_biological_process_overrep.xls

Text:

Overrepresented Biological Process GO terms in genes upregulated

Notes:

application/vnd.ms-excel

Other Study-Related Materials

Label:

res_up_J2vsW_biological_process_raw.xls

Text:

All differentially represented Biological Process GO terms in genes upregulated

Notes:

application/vnd.ms-excel

Other Study-Related Materials

Label:

res_up_J2vsW_biological_process_underrep.xls

Text:

Under-represented Biological Process GO terms in genes upregulated

Notes:

application/vnd.ms-excel

Other Study-Related Materials

Label:

res_up_J2vsW_cellular_component_overrep.xls

Text:

Overrepresented Cellular Component GO terms in genes upregulated

Notes:

application/vnd.ms-excel

Other Study-Related Materials

Label:

res_up_J2vsW_cellular_component_raw.xls

Text:

All differentially represented Cellular Component GO terms in genes upregulated

Notes:

application/vnd.ms-excel

Other Study-Related Materials

Label:

res_up_J2vsW_cellular_component_underrep.xls

Text:

Under-represented Cellular Component GO terms in genes upregulated

Notes:

application/vnd.ms-excel

Other Study-Related Materials

Label:

res_up_J2vsW_molecular_function_overrep.xls

Text:

Overrepresented Molecular Function GO terms in genes upregulated

Notes:

application/vnd.ms-excel

Other Study-Related Materials

Label:

res_up_J2vsW_molecular_function_raw.xls

Text:

All differentially represented Molecular Function GO terms in genes upregulated

Notes:

application/vnd.ms-excel

Other Study-Related Materials

Label:

res_up_J2vsW_molecular_function_underrep.xls

Text:

Under-represent Molecular function GO terms in genes upregulated

Notes:

application/vnd.ms-excel