DROPS maize GWAS analysis dataset (ICPSR doi:10.15454/6TL2N4)

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Part 2: Study Description
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Document Description

Citation

Title:

DROPS maize GWAS analysis dataset

Identification Number:

doi:10.15454/6TL2N4

Distributor:

Portail Data INRAE

Date of Distribution:

2019-06-17

Version:

1

Bibliographic Citation:

Nicolas, Stephane; Negro, Sandra; Millet, Emilie; Bauland, Cyril; Madur, Delphine; Combes, Valérie; Welcker, Claude; Tardieu, François; Charcosset, Alain, 2019, "DROPS maize GWAS analysis dataset", https://doi.org/10.15454/6TL2N4, Portail Data INRAE, V1

Study Description

Citation

Title:

DROPS maize GWAS analysis dataset

Identification Number:

doi:10.15454/6TL2N4

Authoring Entity:

Nicolas, Stephane (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon)

Negro, Sandra (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon)

Millet, Emilie (INRA - Institut National de la Recherche Agronomique, LEPSE)

Bauland, Cyril (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon)

Madur, Delphine (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon)

Combes, Valérie (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon)

Welcker, Claude (INRA - Institut National de la Recherche Agronomique, LEPSE)

Tardieu, François (INRA - Institut National de la Recherche Agronomique, LEPSE)

Charcosset, Alain (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon)

Grant Number:

FP7-KBBE-2009-1-2-05

Grant Number:

ANR-10-BTBR-01

Distributor:

Portail Data INRAE

Access Authority:

Steinbach, Delphine

Access Authority:

Madur, Delphine

Access Authority:

Nicolas, Stephane

Depositor:

Steinbach, Delphine

Date of Deposit:

2018-10-25

Study Scope

Keywords:

Plant Breeding and Plant Products

Abstract:

This dataset corresponds to the most significant SNP (-log(p-value)>5) identified by genome-wide association studies between the three traits (Flowering Time, Plant Height, Grain Yield) measured in 22 environments on a panel of 247 maize inbred lines. These analysis were conducted in the DROPS DROught-yielding PlantS european project (F. Tardieu Coord.) and ANR-PIA Amaizing (A. Charcosset, Coord.). These results were published in Negro S., et al (2019) in BMC Plant Biology: Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies" .

Kind of Data:

Dataset

Methodology and Processing

Sources Statement

Data Access

Notes:

<a rel="license" href="http://creativecommons.org/licenses/by/2.0/fr/"><img alt="Licence Creative Commons" style="border-width:0" src="https://i.creativecommons.org/l/by/2.0/fr/88x31.png" /></a><br />Ce(tte) Ĺ“uvre est mise à disposition selon les termes de la <a rel="license" href="http://creativecommons.org/licenses/by/2.0/fr/">Licence Creative Commons Attribution 2.0 France</a>.

Other Study Description Materials

Related Publications

Citation

Identification Number:

https://doi.org/10.1101/476598

Bibliographic Citation:

Sandra S. Negro, Emilie J. Millet, Delphine Madur, Cyril Bauland, Valérie Combes, Claude Welcker, François Tardieu, Alain Charcosset, Stéphane D. Nicolas: Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies. 2019

Other Study-Related Materials

Label:

GWAS_Result_Drops_Publication_Sandra.tsv

Text:

GWAS results: 4378 loci associated with a -log(p-value)>5 for flowering time (DTA), plant height (PlantHT), and yield (GY15) identified across 22 environments (Env). Three genotyping technologies used for genome-wide association studies were indicated in "Tech" columns (50K, 600K, GBS).

Notes:

text/tab-separated-values