Select SNP for Imputation software (ICPSR doi:10.15454/4KVRWY)

View:

Part 1: Document Description
Part 2: Study Description
Entire Codebook

Document Description

Citation

Title:

Select SNP for Imputation software

Identification Number:

doi:10.15454/4KVRWY

Distributor:

Portail Data INRAE

Date of Distribution:

2020-12-01

Version:

1

Bibliographic Citation:

Herault, Frederic, 2020, "Select SNP for Imputation software", https://doi.org/10.15454/4KVRWY, Portail Data INRAE, V1

Study Description

Citation

Title:

Select SNP for Imputation software

Identification Number:

doi:10.15454/4KVRWY

Authoring Entity:

Herault, Frederic (INRA - Institut National de la Recherche Agronomique)

Distributor:

Portail Data INRAE

Access Authority:

Herault, Frederic

Depositor:

Herault, Frederic

Date of Deposit:

2020-12-01

Study Scope

Keywords:

Genetic Resource

Abstract:

Select SNP subset for Imputation (SS4I) is a tool dedicated to the selection of a sub-panel of SNP for the design of a low density genotyping chip. This program, written in Python, allow the selection of SNP subset according to a chosen linkage disequilibrium (r2) threshold on a chromosome scale.

Kind of Data:

Software

Methodology and Processing

Sources Statement

Data Access

Notes:

Licence BSD3 SS4I: Select SNP 4 Imputation Copyright (C) 2016 INRAE This program is free software; you can redistribute it and/or modify it under the terms of the BSD-3-Clause License. BSD-3-Clause Copyright (c) 2016 INRAE. All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Other Study Description Materials