Enriched GO terms in predicted dorsal gland effectors (doi:10.15454/2O77EF)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
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Document Description

Citation

Title:

Enriched GO terms in predicted dorsal gland effectors

Identification Number:

doi:10.15454/2O77EF

Distributor:

Portail Data INRAE

Date of Distribution:

2021-04-26

Version:

1

Bibliographic Citation:

Danchin, Etienne; Péré, Arthur; Eves-van den Akker, Sebastian; Bournaud, Caroline, 2021, "Enriched GO terms in predicted dorsal gland effectors", https://doi.org/10.15454/2O77EF, Portail Data INRAE, V1, UNF:6:V3kqvCFEYcsZ8EHNP3r6Ow== [fileUNF]

Study Description

Citation

Title:

Enriched GO terms in predicted dorsal gland effectors

Identification Number:

doi:10.15454/2O77EF

Authoring Entity:

Danchin, Etienne (INRA - Institut National de la Recherche Agronomique)

Péré, Arthur (INRA - Institut National de la Recherche Agronomique)

Eves-van den Akker, Sebastian (Department of Plant Sciences, University of Cambridge, UK)

Bournaud, Caroline (Department of Plant Sciences, University of Cambridge, UK)

Distributor:

Portail Data INRAE

Access Authority:

Danchin, Etienne

Depositor:

Danchin, Etienne

Date of Deposit:

2021-03-26

Study Scope

Keywords:

Omics, Plant Health and Pathology

Abstract:

By cross referencing the list of M. incognita proteins having a predicted signal peptide for secretion and no predicted transmembrane region with the list of proteins encoded by genes with Mel-DOG motifs in their upstream regions, we could predict 457 candidate dorsal gland (DG) effectors in the genome.<br> We used the functional annotation produced by InterProScan to search for enriched GO terms in these predicted DG effectors using GOfuncR.

Kind of Data:

Dataset

Kind of Data:

Text

Methodology and Processing

Sources Statement

Data Access

Notes:

<img src="https://www.etalab.gouv.fr/wp-content/uploads/2011/10/licence-ouverte-open-licence.gif" alt="Licence Ouverte" height="100"><a href="https://www.etalab.gouv.fr/licence-ouverte-open-licence">Licence Ouverte / Open Licence Version 2.0</a> compatible CC BY

Other Study Description Materials

File Description--f107908

File: 457-DG-enrichment.tab

  • Number of cases: 9

  • No. of variables per record: 15

  • Type of File: text/tab-separated-values

Notes:

UNF:6:V3kqvCFEYcsZ8EHNP3r6Ow==

Variable Description

List of Variables:

Variables

rootnodename

f107908 Location:

Variable Format: character

Notes: UNF:6:3koqy/HTNxdJk66m6MLxgg==

nodeid

f107908 Location:

Variable Format: character

Notes: UNF:6:6Xt1yRll1UQhlOehGxhp4A==

nodename

f107908 Location:

Variable Format: character

Notes: UNF:6:MfFPSu1NjIcUp5AeYmyNsw==

url

f107908 Location:

Variable Format: character

Notes: UNF:6:cJiewslmLako8K1pBdkreg==

rawpunderrep

f107908 Location:

Summary Statistics: Min. 0.999999904978753; Mean 0.9999999356938621; Max. 1.0; Valid 9.0; StDev 4.6106876999918534E-8

Variable Format: numeric

Notes: UNF:6:oxTgixohDhe/JICvRe5IZA==

rawpoverrep

f107908 Location:

Summary Statistics: Valid 9.0; StDev 2.8796563422607306E-5; Max. 6.33641682391283E-5; Min. 1.79747339097549E-8; Mean 4.460314566487223E-5;

Variable Format: numeric

Notes: UNF:6:b9icfMhxaP0Kifl8TQHu2Q==

FWERunderrep

f107908 Location:

Summary Statistics: Min. 1.0; StDev 0.0; Valid 9.0; Mean 1.0; Max. 1.0;

Variable Format: numeric

Notes: UNF:6:BZVA++AgvYtpNee1DL+/dw==

FWERoverrep

f107908 Location:

Summary Statistics: Min. 0.0; Mean 0.011555555555555557; StDev 0.008187049393876758; Max. 0.017; Valid 9.0

Variable Format: numeric

Notes: UNF:6:fA5s/Qt4aj2vOkfK/cmdSw==

FDRunderrep

f107908 Location:

Summary Statistics: Mean 1.0; Max. 1.0; Min. 1.0; Valid 9.0; StDev 0.0;

Variable Format: numeric

Notes: UNF:6:BZVA++AgvYtpNee1DL+/dw==

FDRoverrep

f107908 Location:

Summary Statistics: StDev 0.003863354219544206; Mean 0.0062653915444120046; Min. 8.96939222096771E-6; Valid 9.0; Max. 0.0087224055038138;

Variable Format: numeric

Notes: UNF:6:BbCaM5WyzT5/yeIGL2HhQg==

nbgenesrootnode

f107908 Location:

Summary Statistics: Min. 12710.0; Mean 12710.0; StDev 0.0; Max. 12710.0; Valid 9.0;

Variable Format: numeric

Notes: UNF:6:ygi/MavdaK0o7/9NcXo/Hw==

nbgeneswithvariable=1inrootnode

f107908 Location:

Summary Statistics: Mean 59.0; Max. 59.0; Min. 59.0; Valid 9.0; StDev 0.0;

Variable Format: numeric

Notes: UNF:6:DATcJY58N1shHmnKsR87Ig==

nbgenenode

f107908 Location:

Summary Statistics: Min. 2.0; Mean 166.0; Valid 9.0; StDev 368.0; Max. 1087.0;

Variable Format: numeric

Notes: UNF:6:Gw5tdQmMjQi4grVMyT2N0g==

nbgeneswithvariable=1innode

f107908 Location:

Summary Statistics: Min. 2.0; Max. 20.0; Valid 9.0; StDev 6.629060600450448; Mean 5.222222222222223

Variable Format: numeric

Notes: UNF:6:ykzHsHUs2S1LTYLHTpEdtA==

namegenesvariable=1innode

f107908 Location:

Variable Format: character

Notes: UNF:6:62SynRaT4AZjUJZAleGqrg==

Other Study-Related Materials

Label:

457-DOG-effectors.txt

Text:

List of the 457 predicted dorsal gland effector proteins.

Notes:

text/plain

Other Study-Related Materials

Label:

GOs-in-457-DG.txt

Text:

GO terms identified in the 457 predicted DG effector proteins. Only 118 DG effectors could be assigned a GO term via InterproScan

Notes:

text/plain