Datasets for the "srnadiff" article. (doi:10.15454/0DCIGO)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
Entire Codebook

Document Description

Citation

Title:

Datasets for the "srnadiff" article.

Identification Number:

doi:10.15454/0DCIGO

Distributor:

Portail Data INRAE

Date of Distribution:

2021-05-05

Version:

1

Bibliographic Citation:

Zytnicki, Matthias, 2021, "Datasets for the "srnadiff" article.", https://doi.org/10.15454/0DCIGO, Portail Data INRAE, V1, UNF:6:idTlcoB9fosBX2MMBcHCRA== [fileUNF]

Study Description

Citation

Title:

Datasets for the "srnadiff" article.

Identification Number:

doi:10.15454/0DCIGO

Authoring Entity:

Zytnicki, Matthias (INRA - Institut National de la Recherche Agronomique)

Distributor:

Portail Data INRAE

Access Authority:

Zytnicki, Matthias

Depositor:

Zytnicki, Matthias

Date of Deposit:

2021-04-30

Study Scope

Keywords:

Computer science, Omics

Abstract:

The dataset contains all the BAM files in order to reproduce the results given in the article.

Kind of Data:

Dataset

Methodology and Processing

Sources Statement

Data Access

Notes:

<img src="https://www.etalab.gouv.fr/wp-content/uploads/2011/10/licence-ouverte-open-licence.gif" alt="Licence Ouverte" height="100"><a href="https://www.etalab.gouv.fr/licence-ouverte-open-licence">Licence Ouverte / Open Licence Version 2.0</a> compatible CC BY

Other Study Description Materials

File Description--f110943

File: data_athaliana.tab

  • Number of cases: 4

  • No. of variables per record: 3

  • Type of File: text/tab-separated-values

Notes:

UNF:6:gTfogI5p9T2Jz8S6KZDqWg==

File Description--f110940

File: data_dmelanogaster.tab

  • Number of cases: 12

  • No. of variables per record: 3

  • Type of File: text/tab-separated-values

Notes:

UNF:6:2ZV/8jIuwI6lpwb0Vqu4bA==

File Description--f110944

File: data_hsapiens.tab

  • Number of cases: 12

  • No. of variables per record: 3

  • Type of File: text/tab-separated-values

Notes:

UNF:6:Dd0MQcCeYgx/knXgkXT7CQ==

File Description--f110946

File: data_simulated.tab

  • Number of cases: 12

  • No. of variables per record: 3

  • Type of File: text/tab-separated-values

Notes:

UNF:6:T+q8QmErv8ZWdXSM6n8YJA==

Variable Description

List of Variables:

Variables

FileName

f110943 Location:

Variable Format: character

Notes: UNF:6:sdEPkV3JzHb3iq6ZqNGDGw==

SampleName

f110943 Location:

Variable Format: character

Notes: UNF:6:KOebilNUw0e1uRUj8j0FGA==

Condition

f110943 Location:

Variable Format: character

Notes: UNF:6:zI/usI8NiUvRjBMZCa6IZA==

FileName

f110940 Location:

Variable Format: character

Notes: UNF:6:P6roISMITLTA/j6fHYZlcA==

SampleName

f110940 Location:

Variable Format: character

Notes: UNF:6:wjjzXAZzXNnQT/jh2ChiMw==

Condition

f110940 Location:

Variable Format: character

Notes: UNF:6:x3UC8Z4861asmDZcrTRX+A==

FileName

f110944 Location:

Variable Format: character

Notes: UNF:6:K+librE7hmwQ5dAyuCtvsw==

SampleName

f110944 Location:

Variable Format: character

Notes: UNF:6:U09Fwkc7eGE2BMKiS8p9fw==

Condition

f110944 Location:

Variable Format: character

Notes: UNF:6:xeKMHak11p6IARGBEf498g==

FileName

f110946 Location:

Variable Format: character

Notes: UNF:6:VSKo/d0tbUlBDwct2IQwmQ==

SampleName

f110946 Location:

Variable Format: character

Notes: UNF:6:EGMZf2ZO8yYzq9ncAQDQBA==

Condition

f110946 Location:

Variable Format: character

Notes: UNF:6:vIr0E/CwOytn6pdQ+6Cx6w==

Other Study-Related Materials

Label:

diffVal.bed

Text:

Validated differentially expressed small RNAs in the simulated dataset.

Notes:

application/vnd.realvnc.bed

Other Study-Related Materials

Label:

HO1.bam

Text:

Sample for the D. melanogaster dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

HO2.bam

Text:

Sample for the D. melanogaster dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

HO3.bam

Text:

Sample for the D. melanogaster dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

HO4.bam

Text:

Sample for the D. melanogaster dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

HO5.bam

Text:

Sample for the D. melanogaster dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

HO6.bam

Text:

Sample for the D. melanogaster dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

HO8.bam

Text:

Sample for the D. melanogaster dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

HY1.bam

Text:

Sample for the D. melanogaster dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

HY2.bam

Text:

Sample for the D. melanogaster dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

HY3.bam

Text:

Sample for the D. melanogaster dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

HY4.bam

Text:

Sample for the D. melanogaster dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

sample_01.bam

Text:

Sample for the simulated dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

sample_02.bam

Text:

Sample for the simulated dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

sample_03.bam

Text:

Sample for the simulated dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

sample_04.bam

Text:

Sample for the simulated dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

sample_05.bam

Text:

Sample for the simulated dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

sample_06.bam

Text:

Sample for the simulated dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

sample_07.bam

Text:

Sample for the simulated dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

sample_08.bam

Text:

Sample for the simulated dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

sample_09.bam

Text:

Sample for the simulated dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

sample_10.bam

Text:

Sample for the simulated dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

sample_11.bam

Text:

Sample for the simulated dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

sample_12.bam

Text:

Sample for the simulated dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

SRR452274.bam

Text:

Sample for the A. thaliana dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

SRR452275.bam

Text:

Sample for the A. thaliana dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

SRR452276.bam

Text:

Sample for the A. thaliana dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

SRR452277.bam

Text:

Sample for the A. thaliana dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

SRR493961.bam

Text:

Sample of the H. sapiens dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

SRR493962.bam

Text:

Sample for the H. sapiens dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

SRR493963.bam

Text:

Sample for the H. sapiens dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

SRR493964.bam

Text:

Sample of the H. sapiens dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

SRR493965.bam

Text:

Sample of the H. sapiens dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

SRR493966.bam

Text:

Sample of the H. sapiens dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

SRR493967.bam

Text:

Sample of the H. sapiens dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

SRR493968.bam

Text:

Sample of the H. sapiens dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

SRR493969.bam

Text:

Sample of the H. sapiens dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

SRR493970.bam

Text:

Sample of the H. sapiens dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

SRR493971.bam

Text:

Sample of the H. sapiens dataset.

Notes:

application/gzip

Other Study-Related Materials

Label:

SRR493972.bam

Text:

Sample of the H. sapiens dataset.

Notes:

application/gzip