Bioindication diatomées : comparaison microscopie / barcoding ADN. Données brutes Fastq 2016 + 2017, Test des différentes stratégies bioinfo sur données 2016. Projet AFB numéro 15000239 / A30. (ICPSR doi:10.15454/9EG5Z4)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
Entire Codebook

(external link)

Document Description

Citation

Title:

Bioindication diatomées : comparaison microscopie / barcoding ADN. Données brutes Fastq 2016 + 2017, Test des différentes stratégies bioinfo sur données 2016. Projet AFB numéro 15000239 / A30.

Identification Number:

doi:10.15454/9EG5Z4

Distributor:

Portail Data INRAE

Date of Distribution:

2018-12-04

Version:

1

Bibliographic Citation:

Rivera, Sinziana; Vasselon, Valentin; Chardon, Cécile; Guéguen, Julie; Bouchez, Agnès; Rimet, Frédéric, 2018, "Bioindication diatomées : comparaison microscopie / barcoding ADN. Données brutes Fastq 2016 + 2017, Test des différentes stratégies bioinfo sur données 2016. Projet AFB numéro 15000239 / A30.", https://doi.org/10.15454/9EG5Z4, Portail Data INRAE, V1, UNF:6:ajEMExtsrc4xeT8GdJzfgQ== [fileUNF]

Study Description

Citation

Title:

Bioindication diatomées : comparaison microscopie / barcoding ADN. Données brutes Fastq 2016 + 2017, Test des différentes stratégies bioinfo sur données 2016. Projet AFB numéro 15000239 / A30.

Identification Number:

doi:10.15454/9EG5Z4

Authoring Entity:

Rivera, Sinziana (INRA - Institut National de la Recherche Agronomique)

Vasselon, Valentin (INRA - Institut National de la Recherche Agronomique)

Chardon, Cécile (INRA - Institut National de la Recherche Agronomique)

Guéguen, Julie (INRA - Institut National de la Recherche Agronomique)

Bouchez, Agnès (INRA - Institut National de la Recherche Agronomique)

Rimet, Frédéric (INRA - Institut National de la Recherche Agronomique)

Distributor:

Portail Data INRAE

Access Authority:

Rimet, Frederic

Depositor:

Rimet, Frederic

Date of Deposit:

2018-12-04

Study Scope

Keywords:

Biodiversity and Ecology, Microorganisms, Water resources

Abstract:

Fichiers fastq<br>rassemble tous les fichier fastq des échantillons de 2016 et 2017 Ils sont numérotés de 1.fastq à 464.fastq La correspondance avec les échantillons est donné dans le fichier Suivi_Mothur_Run_Dreal_2016_2017.xlsx<br><br>Test des différentes stratégies bioinfo - data 2016.zip<br>>dossier "Free OTU (2016)" stratégie basée sur les séquences filtrées<br>>dossier "OTU DREAL (2016)" stratégie basée sur les OTUs, crées soit avec méthode Furthest neighbor ou méthode Opticlust<br>>dossier "Raw_reads (2016)"<br>stratégie basée sur les séquences brutes

Kind of Data:

Dataset

Methodology and Processing

Sources Statement

Data Access

Notes:

<img src="https://www.etalab.gouv.fr/wp-content/uploads/2011/10/licence-ouverte-open-licence.gif" alt="Licence Ouverte" height="100"><a href="https://www.etalab.gouv.fr/licence-ouverte-open-licence">Licence Ouverte / Open Licence Version 2.0</a> compatible CC BY

Other Study Description Materials

Related Publications

Citation

Bibliographic Citation:

Sinziana Rivera, Valentin Vasselon, Cécile Chardon, Louis Jacas, Julie Guéguen, Agnès Bouchez, Frédéric Rimet, 2018. Bioindication diatomées : comparaison microscopie / barcoding ADN. Projet AFB numéro 15000239 / A30. 60 pages

File Description--f77449

File: Suivi_Mothur_Run_Dreal_2016_2017.tab

  • Number of cases: 464

  • No. of variables per record: 12

  • Type of File: text/tab-separated-values

Notes:

UNF:6:ajEMExtsrc4xeT8GdJzfgQ==

Variable Description

List of Variables:

Variables

IDfichier

f77449 Location:

Variable Format: character

Notes: UNF:6:yZN27vyWwe3J2Zql6GDU2A==

IDech

f77449 Location:

Variable Format: character

Notes: UNF:6:ryhjBH3mVG71lqetUpM06Q==

Idmothur

f77449 Location:

Summary Statistics: Mean 232.5; Valid 464.0; StDev 134.08952233489387; Max. 464.0; Min. 1.0;

Variable Format: numeric

Notes: UNF:6:SOO7bsQzn7UpEoN51eNelw==

D

f77449 Location:

Summary Statistics: Max. NaN; Min. NaN; Valid 0.0; StDev NaN; Mean NaN

Variable Format: numeric

Notes: UNF:6:g0s1fX057qDgwQ0RsiGfaA==

E

f77449 Location:

Summary Statistics: Valid 0.0; Max. NaN; Min. NaN; Mean NaN; StDev NaN;

Variable Format: numeric

Notes: UNF:6:g0s1fX057qDgwQ0RsiGfaA==

F

f77449 Location:

Summary Statistics: Max. NaN; Mean NaN; Min. NaN; Valid 0.0; StDev NaN

Variable Format: numeric

Notes: UNF:6:g0s1fX057qDgwQ0RsiGfaA==

G

f77449 Location:

Summary Statistics: Mean NaN; Min. NaN; Max. NaN; Valid 0.0; StDev NaN

Variable Format: numeric

Notes: UNF:6:g0s1fX057qDgwQ0RsiGfaA==

H

f77449 Location:

Summary Statistics: StDev NaN; Mean NaN; Max. NaN; Valid 0.0; Min. NaN

Variable Format: numeric

Notes: UNF:6:g0s1fX057qDgwQ0RsiGfaA==

I

f77449 Location:

Summary Statistics: StDev NaN; Mean NaN; Valid 0.0; Max. NaN; Min. NaN;

Variable Format: numeric

Notes: UNF:6:g0s1fX057qDgwQ0RsiGfaA==

J

f77449 Location:

Summary Statistics: Max. NaN; Min. NaN; Mean NaN; StDev NaN; Valid 0.0

Variable Format: numeric

Notes: UNF:6:g0s1fX057qDgwQ0RsiGfaA==

K

f77449 Location:

Summary Statistics: Max. NaN; Min. NaN; StDev NaN; Valid 0.0; Mean NaN

Variable Format: numeric

Notes: UNF:6:g0s1fX057qDgwQ0RsiGfaA==

L

f77449 Location:

Summary Statistics: Mean NaN; Max. NaN; Min. NaN; Valid 0.0; StDev NaN

Variable Format: numeric

Notes: UNF:6:g0s1fX057qDgwQ0RsiGfaA==

Other Study-Related Materials

Label:

100.fastq

Notes:

application/octet-stream

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Label:

101.fastq

Notes:

application/octet-stream

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Label:

102.fastq

Notes:

application/octet-stream

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103.fastq

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application/octet-stream

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104.fastq

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application/octet-stream

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105.fastq

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application/octet-stream

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106.fastq

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application/octet-stream

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107.fastq

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application/octet-stream

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108.fastq

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application/octet-stream

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109.fastq

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application/octet-stream

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10.fastq

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application/octet-stream

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110.fastq

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111.fastq

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112.fastq

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113.fastq

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114.fastq

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115.fastq

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116.fastq

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117.fastq

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118.fastq

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11.fastq

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120.fastq

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121.fastq

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122.fastq

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127.fastq

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128.fastq

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129.fastq

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12.fastq

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130.fastq

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application/octet-stream

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131.fastq

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132.fastq

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133.fastq

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134.fastq

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135.fastq

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application/octet-stream

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136.fastq

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application/octet-stream

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137.fastq

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138.fastq

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139.fastq

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13.fastq

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140.fastq

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141.fastq

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142.fastq

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143.fastq

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144.fastq

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145.fastq

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146.fastq

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147.fastq

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148.fastq

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149.fastq

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14.fastq

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150.fastq

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152.fastq

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153.fastq

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16.fastq

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application/octet-stream

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170.fastq

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171.fastq

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17.fastq

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application/octet-stream

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180.fastq

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application/octet-stream

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181.fastq

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182.fastq

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183.fastq

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184.fastq

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185.fastq

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186.fastq

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187.fastq

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188.fastq

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application/octet-stream

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189.fastq

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application/octet-stream

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18.fastq

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application/octet-stream

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190.fastq

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191.fastq

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192.fastq

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193.fastq

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194.fastq

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195.fastq

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196.fastq

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197.fastq

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198.fastq

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199.fastq

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application/octet-stream

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19.fastq

Notes:

application/octet-stream

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Label:

1.fastq

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application/octet-stream

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200.fastq

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application/octet-stream

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201.fastq

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202.fastq

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203.fastq

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204.fastq

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206.fastq

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208.fastq

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209.fastq

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20.fastq

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application/octet-stream

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210.fastq

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211.fastq

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212.fastq

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application/octet-stream

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213.fastq

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214.fastq

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215.fastq

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216.fastq

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217.fastq

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218.fastq

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219.fastq

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21.fastq

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application/octet-stream

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220.fastq

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221.fastq

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222.fastq

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225.fastq

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226.fastq

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227.fastq

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228.fastq

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229.fastq

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22.fastq

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230.fastq

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231.fastq

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232.fastq

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233.fastq

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234.fastq

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235.fastq

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236.fastq

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application/octet-stream

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237.fastq

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application/octet-stream

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238.fastq

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application/octet-stream

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239.fastq

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application/octet-stream

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23.fastq

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application/octet-stream

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240.fastq

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241.fastq

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242.fastq

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243.fastq

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244.fastq

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245.fastq

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246.fastq

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249.fastq

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24.fastq

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250.fastq

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251.fastq

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252.fastq

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253.fastq

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254.fastq

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255.fastq

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256.fastq

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257.fastq

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258.fastq

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259.fastq

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25.fastq

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260.fastq

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261.fastq

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262.fastq

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263.fastq

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264.fastq

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265.fastq

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266.fastq

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267.fastq

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268.fastq

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269.fastq

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26.fastq

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270.fastq

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271.fastq

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272.fastq

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273.fastq

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278.fastq

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286.fastq

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287.fastq

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288.fastq

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289.fastq

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28.fastq

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application/octet-stream

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