Genotypic description of the near isogenic lines (HIFs) used for QTL validation and significance of the observed segregating phenotypes (Marchadier, Hanemian, Tisné et al., 2019) (doi:10.15454/EORHL8)

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Document Description

Citation

Title:

Genotypic description of the near isogenic lines (HIFs) used for QTL validation and significance of the observed segregating phenotypes (Marchadier, Hanemian, Tisné et al., 2019)

Identification Number:

doi:10.15454/EORHL8

Distributor:

Portail Data INRAE

Date of Distribution:

2018-06-25

Version:

1

Bibliographic Citation:

Loudet, Olivier, 2018, "Genotypic description of the near isogenic lines (HIFs) used for QTL validation and significance of the observed segregating phenotypes (Marchadier, Hanemian, Tisné et al., 2019)", https://doi.org/10.15454/EORHL8, Portail Data INRAE, V1

Study Description

Citation

Title:

Genotypic description of the near isogenic lines (HIFs) used for QTL validation and significance of the observed segregating phenotypes (Marchadier, Hanemian, Tisné et al., 2019)

Identification Number:

doi:10.15454/EORHL8

Authoring Entity:

Loudet, Olivier (INRA - Institut National de la Recherche Agronomique)

Grant Number:

ERC-2009-StG-243359

Grant Number:

ANR-09-BLAN-0366

Distributor:

Portail Data INRAE

Access Authority:

Loudet, Olivier

Depositor:

Loudet, Olivier

Date of Deposit:

2018-06-24

Study Scope

Keywords:

Earth and Environmental Sciences, Medicine, Health and Life Sciences

Topic Classification:

Omics, Biodiversity and Ecology

Abstract:

Each row represents a single HIF and the genotype of the F7 RIL it originates from is indicated along the chromosomes with RIL ID, markers and genotypic conventions from Publiclines http://publiclines.versailles.inra.fr/rils/index (i.e. 'A' = Col allele; 'B' = alternate parental allele; 'C' = heterozygous). The region highlighted in yellow is the segregating region that is tested in the HIF family through several fixed lines for each parental allele. For each of the 3 growth traits (Compactness29 = rosette compactness 29 days after sowing; PRA29 = Projected Rosette Area 29 days after sowing; RER16-29 = Relative rosette Expansion Rate between days 16 and 29 after sowing) in 2 conditions ('WW' = Well Watered / 'WD' = Water Deficit), whenever significant, the p-value of the comparison between allelic lines ('Pval') and the direction of the allelic effect ('sign' calculated as [Col-Xxx] where Xxx is the alternate parental allele) are indicated in the last columns of the table.

Kind of Data:

Dataset

Methodology and Processing

Sources Statement

Data Access

Notes:

<img src="https://www.etalab.gouv.fr/wp-content/uploads/2011/10/licence-ouverte-open-licence.gif" alt="Licence Ouverte" height="100"><a href="https://www.etalab.gouv.fr/licence-ouverte-open-licence">Licence Ouverte / Open Licence Version 2.0</a> compatible CC BY

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Related Publications

Citation

Bibliographic Citation:

Marchadier, Hanemian, Tisné et al., PLoS Genetics, 2019 https://doi.org/10.1371/journal.pgen.1007954

Citation

Bibliographic Citation:

Marchadier, Hanemian, Tisné et al., BioRxiv, 2018

Other Study-Related Materials

Label:

Supp_DataSetS2F.xlsx

Notes:

application/vnd.openxmlformats-officedocument.spreadsheetml.sheet