Bioinformatic and statistical scripts to analyze metabarcoding data of fungal communities (ICPSR doi:10.15454/0CNFWS)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
Entire Codebook

Document Description

Citation

Title:

Bioinformatic and statistical scripts to analyze metabarcoding data of fungal communities

Identification Number:

doi:10.15454/0CNFWS

Distributor:

Portail Data INRAE

Date of Distribution:

2020-07-16

Version:

1

Bibliographic Citation:

Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts to analyze metabarcoding data of fungal communities", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V1, UNF:6:AbAHJCHSVEP+kwY2z9TN7A== [fileUNF]

Study Description

Citation

Title:

Bioinformatic and statistical scripts to analyze metabarcoding data of fungal communities

Subtitle:

Maternal effects shape seed fungal communities in Quercus petraea

Identification Number:

doi:10.15454/0CNFWS

Authoring Entity:

Fort, Tania (INRAE)

Pauvert, Charlie (INRAE)

Zanne, Amy (George Washington University, USA)

Ovaskainen, Otso (University of Helsinki, Finland)

Caignard, Thomas (INRAE)

Barret, Matthieu (INRAE)

Compant, Stéphane (AIT, Autriche)

Hampe, Arndt (INRAE)

Delzon, Sylvain (INRAE)

Vacher, Corinne (INRAE)

Distributor:

Portail Data INRAE

Access Authority:

Vacher, Corinne

Depositor:

Vacher, Corinne

Date of Deposit:

2020-07-16

Study Scope

Keywords:

Biodiversity and Ecology, Forests and Forest Products, Microorganisms, Omics, Plant Health and Pathology

Abstract:

This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al., Maternal effects shape seed fungal communities in Quercus petraea. Submitted). The bioinformatic script was applied to raw sequences after paired-end sequences were joined using PEAR v0.9.10 (Zhang et al., 2014). Raw sequences are available at https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA551388. The metadata and ASV tables are provided so that the statistical analysis scripts can be applied without running the bioinformatic steps. Scripts used to fit HMSC models (Ovaskainen et al., 2017) are provided.

Kind of Data:

Software

Kind of Data:

Workflow

Methodology and Processing

Sources Statement

Data Access

Notes:

<img src="https://www.etalab.gouv.fr/wp-content/uploads/2011/10/licence-ouverte-open-licence.gif" alt="Licence Ouverte" height="100"><a href="https://www.etalab.gouv.fr/licence-ouverte-open-licence">Licence Ouverte / Open Licence Version 2.0</a> compatible CC BY

Other Study Description Materials

Related Publications

Citation

Bibliographic Citation:

Tania Fort, Charlie Pauvert, Amy E. Zanne, Otso Ovaskainen, Thomas Caignard, Matthieu Barret, Stéphane Compant, Arndt Hampe, Sylvain Delzon and Corinne Vacher. Maternal effects shape seed fungal communities in Quercus petraea. Submitted

File Description--f100214

File: metadata_for_pipeline.tab

  • Number of cases: 332

  • No. of variables per record: 1

  • Type of File: text/tab-separated-values

Notes:

UNF:6:dh/+ng88CsA7CWKzy1ZsMQ==

File Description--f100215

File: metadata_for_stat_analysis.tab

  • Number of cases: 184

  • No. of variables per record: 1

  • Type of File: text/tab-separated-values

Notes:

UNF:6:eLUShhkRZJEcWtTzJqWdRA==

File Description--f100204

File: Species_network_description.tab

  • Number of cases: 14

  • No. of variables per record: 1

  • Type of File: text/tab-separated-values

Notes:

UNF:6:gCJFrUKYJSVPYJTAEvBtZA==

File Description--f100220

File: SpeciesX.tab

  • Number of cases: 78

  • No. of variables per record: 118

  • Type of File: text/tab-separated-values

Notes:

UNF:6:ob1YpCWUwL+X6v4cnBtLyg==

Variable Description

List of Variables:

Variables

sample_name;sample_type;tissue_type;Run;Offspring

f100214 Location:

Variable Format: character

Notes: UNF:6:dh/+ng88CsA7CWKzy1ZsMQ==

Sample_name;site;sample_depth;ASV_richness;valley;elevation;DMS_latitude;DMS_longitude;tree_ID;sample_type;tissue_type;env_broad_scale;sample_position;Run

f100215 Location:

Variable Format: character

Notes: UNF:6:eLUShhkRZJEcWtTzJqWdRA==

Fungal species;FUNGuild;Literature;Habitat;Literature_cat;Cat

f100204 Location:

Variable Format: character

Notes: UNF:6:gCJFrUKYJSVPYJTAEvBtZA==

ASV1

f100220 Location:

Summary Statistics: Max. 0.61520757987865; StDev 0.06965276326892192; Mean 0.00797657969324901; Valid 78.0; Min. 0.0

Variable Format: numeric

Notes: UNF:6:7WQFLoXg76iF74M1wGrrgQ==

ASV2

f100220 Location:

Summary Statistics: Valid 78.0; Min. 0.0; StDev 0.04556037432457003; Mean 0.00988383126038222; Max. 0.377090724784592;

Variable Format: numeric

Notes: UNF:6:AnS5p2fBUlnhfo2yLWBZeQ==

ASV3

f100220 Location:

Summary Statistics: Mean 0.0058624175791616865; Valid 78.0; StDev 0.03675992239381688; Max. 0.323170731707317; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:8qdLZ5LDlkTrm6Ei2DHPUw==

ASV4

f100220 Location:

Summary Statistics: Max. 0.00178898682258487; Valid 78.0; Mean 2.581060523433764E-5; Min. 0.0; StDev 2.038204898140289E-4;

Variable Format: numeric

Notes: UNF:6:ttLS98FeRHOrD039qDXFOw==

ASV5

f100220 Location:

Summary Statistics: Mean 0.02522099434670561; Valid 78.0; StDev 0.1064384713906916; Min. 0.0; Max. 0.866801774018269

Variable Format: numeric

Notes: UNF:6:PKpNRpbEH9+WZRtsnBbJKA==

ASV6

f100220 Location:

Summary Statistics: Min. 0.0; Max. 0.408294328943072; Mean 0.02289307394007199; Valid 78.0; StDev 0.07081407573645075

Variable Format: numeric

Notes: UNF:6:LppxsZstDpwuRDHr4GFKYg==

ASV7

f100220 Location:

Summary Statistics: StDev 0.005959995693017256; Mean 0.002880690345109869; Min. 0.0; Max. 0.0334459156529276; Valid 78.0

Variable Format: numeric

Notes: UNF:6:d3PF2b0dllqDuOeA8iagqg==

ASV9

f100220 Location:

Summary Statistics: StDev 0.0659950643754217; Max. 0.270060396893874; Mean 0.05489805222196473; Min. 0.0; Valid 78.0;

Variable Format: numeric

Notes: UNF:6:gNx7Ac+5UoKRErZPtZ3lGQ==

ASV11

f100220 Location:

Summary Statistics: Valid 78.0; Min. 0.0; Mean 0.008634118121171533; Max. 0.116611661166117; StDev 0.018876056694348532;

Variable Format: numeric

Notes: UNF:6:z07qa+KQW+8xnhLSLmq9RQ==

ASV14

f100220 Location:

Summary Statistics: Max. 0.634973314795712; Mean 0.017217257879835336; StDev 0.09886521047474285; Valid 78.0; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:yScbfwB+haoiXRF/G6QPYg==

ASV15

f100220 Location:

Summary Statistics: StDev 1.5109749605667785E-4; Valid 78.0; Max. 0.00106514183204395; Min. 0.0; Mean 3.581522358430021E-5;

Variable Format: numeric

Notes: UNF:6:V8Y5E8OvEco3FwaM+5D2gA==

ASV17

f100220 Location:

Summary Statistics: Valid 78.0; Min. 0.0; Max. 0.142455482661668; StDev 0.03457465484577808; Mean 0.023829747916205506;

Variable Format: numeric

Notes: UNF:6:BnP74LmZh4Jv29T55trY/A==

ASV19

f100220 Location:

Summary Statistics: Max. 0.196080780421017; Mean 0.006910566134039552; Min. 0.0; StDev 0.02808282732631487; Valid 78.0

Variable Format: numeric

Notes: UNF:6:24Papdq+ELBBc2LYVYpKtA==

ASV20

f100220 Location:

Summary Statistics: Valid 78.0; StDev 0.03355947872634888; Mean 0.010768644847504852; Min. 0.0; Max. 0.244437105230566;

Variable Format: numeric

Notes: UNF:6:vVannGBdG3h10aS8ce7WJQ==

ASV23

f100220 Location:

Summary Statistics: Max. 0.15631737818025; StDev 0.043252434684521425; Valid 78.0; Min. 0.0; Mean 0.024469008337767283;

Variable Format: numeric

Notes: UNF:6:DOJS4EaACOVSdqs0EOOAOQ==

ASV25

f100220 Location:

Summary Statistics: Min. 0.0; Max. 0.383344803854095; StDev 0.05673514621172003; Valid 78.0; Mean 0.030651000426077428

Variable Format: numeric

Notes: UNF:6:vCz+VpCXdWRzEFFGHPPYQA==

ASV26

f100220 Location:

Summary Statistics: Valid 78.0; Max. 0.543035993740219; StDev 0.06562520829430264; Min. 0.0; Mean 0.012574356694704282

Variable Format: numeric

Notes: UNF:6:r9hdjtxotUuFRvJff9JP5Q==

ASV27

f100220 Location:

Summary Statistics: Valid 78.0; Max. 0.393213849739208; Mean 0.01284845136204876; Min. 0.0; StDev 0.050226269844747234;

Variable Format: numeric

Notes: UNF:6:NTTA0+pg6fLbGr/73u2SIA==

ASV30

f100220 Location:

Summary Statistics: Min. 0.0; Max. 0.0626838293431165; Valid 78.0; Mean 0.006812426620197322; StDev 0.012387752453981597

Variable Format: numeric

Notes: UNF:6:H6CTM+EkqWyv1VGmfTnibg==

ASV31

f100220 Location:

Summary Statistics: StDev 0.04204180641349095; Min. 0.0; Mean 0.010936059647378165; Max. 0.245770258236866; Valid 78.0;

Variable Format: numeric

Notes: UNF:6:Fk/1e7pyvkL9WuTFsx+ADQ==

ASV32

f100220 Location:

Summary Statistics: Mean 0.00682505666801975; Valid 78.0; Max. 0.169726537424573; StDev 0.025462064702561262; Min. 0.0

Variable Format: numeric

Notes: UNF:6:1zU2grka6bCVvFN3NV+QOg==

ASV34

f100220 Location:

Summary Statistics: StDev 0.01569711278598226; Min. 0.0; Max. 0.101427371956339; Valid 78.0; Mean 0.006322533612140485

Variable Format: numeric

Notes: UNF:6:MtjqnUbXIS859Zr9ryO5uA==

ASV35

f100220 Location:

Summary Statistics: StDev 0.0044735309515339305; Min. 0.0; Max. 0.0274828886716022; Mean 0.0014630463807957616; Valid 78.0

Variable Format: numeric

Notes: UNF:6:lULvbHObjp6EA+AwuPM6uA==

ASV36

f100220 Location:

Summary Statistics: Mean 0.016050323749355243; Min. 0.0; StDev 0.03190893716331088; Valid 78.0; Max. 0.238728821671293;

Variable Format: numeric

Notes: UNF:6:Yk86jJwzof9TUrHtuvUXRA==

ASV37

f100220 Location:

Summary Statistics: Valid 78.0; Mean 0.009414938608132703; StDev 0.027043859855461226; Max. 0.17009420193711; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:j7Vg6m2wnLIXU3wvGNZqIA==

ASV38

f100220 Location:

Summary Statistics: Max. 0.0394437420986094; Mean 0.004760344810774544; StDev 0.008037701416019942; Min. 0.0; Valid 78.0

Variable Format: numeric

Notes: UNF:6:W4Mxyla1r6kj6q1AV4IS7w==

ASV41

f100220 Location:

Summary Statistics: Max. 0.127193141120718; StDev 0.022580908763354304; Min. 0.0; Mean 0.006327182255772084; Valid 78.0

Variable Format: numeric

Notes: UNF:6:eMFmnmWmuBmy804sf3ycOQ==

ASV42

f100220 Location:

Summary Statistics: StDev 1.9016674691179036E-4; Valid 78.0; Mean 3.6196709635808026E-5; Min. 0.0; Max. 0.00125449050578776

Variable Format: numeric

Notes: UNF:6:iIYCS+F/89bLQ+EiLSRK/A==

ASV43

f100220 Location:

Summary Statistics: Max. 0.137131888197013; Min. 0.0; Valid 78.0; StDev 0.019497759498341108; Mean 0.009046921011566974;

Variable Format: numeric

Notes: UNF:6:VybgMBBy8E5E6OOOPWXNDQ==

ASV44

f100220 Location:

Summary Statistics: StDev 0.014434702345526988; Valid 78.0; Min. 0.0; Mean 0.0035543162298195628; Max. 0.0839272148464349

Variable Format: numeric

Notes: UNF:6:62PbBSNRJW2DCSG7PldHDg==

ASV45

f100220 Location:

Summary Statistics: StDev 0.0031501638105876605; Mean 0.0016792852431033692; Valid 78.0; Max. 0.0213787085514834; Min. 0.0

Variable Format: numeric

Notes: UNF:6:ENY7ji+9XzrfTYJuwSe7MQ==

ASV46

f100220 Location:

Summary Statistics: StDev 0.02160256328782165; Max. 0.0964968513141521; Min. 0.0; Valid 78.0; Mean 0.009168987445359057;

Variable Format: numeric

Notes: UNF:6:o59qRKJcCgqf6b5hly1chg==

ASV47

f100220 Location:

Summary Statistics: Mean 0.011407623205248607; Valid 78.0; StDev 0.023036095876164838; Max. 0.0975609756097561; Min. 0.0

Variable Format: numeric

Notes: UNF:6:yYgn7YmektyAtSJn0hK2Sw==

ASV49

f100220 Location:

Summary Statistics: Valid 78.0; Mean 0.004501672401393012; Min. 0.0; Max. 0.250814826044114; StDev 0.02853512948215265

Variable Format: numeric

Notes: UNF:6:iTXyNyMl7eAGbi2jARmyiQ==

ASV50

f100220 Location:

Summary Statistics: Max. 0.111021891640605; Min. 0.0; Mean 0.004677416845157275; StDev 0.01532453702866039; Valid 78.0

Variable Format: numeric

Notes: UNF:6:a44qnar8qNpQAaVBl+Is1g==

ASV51

f100220 Location:

Summary Statistics: Min. 0.0; Mean 0.001798529469864233; StDev 0.0102620140054391; Valid 78.0; Max. 0.0802469135802469;

Variable Format: numeric

Notes: UNF:6:dHsIDNa3/rs1BDQKZLUBdQ==

ASV54

f100220 Location:

Summary Statistics: Valid 78.0; StDev 0.020346859756536318; Mean 0.007389694659748886; Min. 0.0; Max. 0.117626827171109

Variable Format: numeric

Notes: UNF:6:aizu8M3msWGGuDVrLwTF1Q==

ASV56

f100220 Location:

Summary Statistics: Max. 0.0303949063897521; Valid 78.0; Min. 0.0; Mean 0.0013719478265759339; StDev 0.004066246267744779;

Variable Format: numeric

Notes: UNF:6:WiJj1ebUJ5SDUMEBsJ71Fg==

ASV60

f100220 Location:

Summary Statistics: Mean 0.015530077787414446; Valid 78.0; Min. 0.0; Max. 0.754895489548955; StDev 0.08584876281955185

Variable Format: numeric

Notes: UNF:6:oKrjNYPGoBER5cucevuW4g==

ASV61

f100220 Location:

Summary Statistics: Max. 0.0934595426811883; Mean 0.003368926519850111; Min. 0.0; StDev 0.014609975135529892; Valid 78.0

Variable Format: numeric

Notes: UNF:6:/5R5OEkSroo7AITgmZjrvQ==

ASV62

f100220 Location:

Summary Statistics: Mean 0.0041452744584280585; Min. 0.0; Valid 78.0; Max. 0.0563234602726845; StDev 0.011386587955206112;

Variable Format: numeric

Notes: UNF:6:Q9hHmzRP49tTa6KkJhdqDA==

ASV63

f100220 Location:

Summary Statistics: Min. 0.0; StDev 0.015228995636787833; Max. 0.108985110388499; Mean 0.0035275501550282823; Valid 78.0;

Variable Format: numeric

Notes: UNF:6:0t0gbtM8KJEMxp6Rvg/Gaw==

ASV70

f100220 Location:

Summary Statistics: Min. 0.0; Max. 0.178537330532748; Mean 0.011419747303226788; Valid 78.0; StDev 0.029835543824312312

Variable Format: numeric

Notes: UNF:6:VBb7vHoM/Bb9V+07pbyZYw==

ASV72

f100220 Location:

Summary Statistics: Mean 0.004674172740604981; Min. 0.0; StDev 0.008050824620476764; Valid 78.0; Max. 0.051357011955668;

Variable Format: numeric

Notes: UNF:6:qvr2HsccDSfhLjfUpnkQ0g==

ASV74

f100220 Location:

Summary Statistics: Valid 78.0; Min. 0.0; StDev 0.009728433106203551; Mean 0.002599061378792133; Max. 0.0622111928803697

Variable Format: numeric

Notes: UNF:6:zD7cI0Mu1se1CVzqnyQMRA==

ASV78

f100220 Location:

Summary Statistics: Max. 0.0945062132112492; StDev 0.01695591187025675; Mean 0.009094938418967989; Valid 78.0; Min. 0.0

Variable Format: numeric

Notes: UNF:6:DSn67mqDfbn4qaPozfoErg==

ASV80

f100220 Location:

Summary Statistics: Max. 0.0104284841609215; StDev 0.002098517749024455; Min. 0.0; Valid 78.0; Mean 8.726814152795216E-4

Variable Format: numeric

Notes: UNF:6:8/6pBQCi78fslYjUs+qvkg==

ASV82

f100220 Location:

Summary Statistics: Min. 0.0; Max. 0.0129581827568405; Valid 78.0; Mean 0.0011427401409865774; StDev 0.0027473650010549616;

Variable Format: numeric

Notes: UNF:6:tT67U6NsmMgCoE3K+sYRBw==

ASV83

f100220 Location:

Summary Statistics: StDev 0.012348987744016467; Max. 0.0700190604327839; Mean 0.003598706618503966; Min. 0.0; Valid 78.0;

Variable Format: numeric

Notes: UNF:6:8ABVPLiHuG26ooZwNqUm1A==

ASV86

f100220 Location:

Summary Statistics: Valid 78.0; StDev 0.025575188093858378; Max. 0.132766514061478; Mean 0.009042444915068051; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:qctlN8JrhX8VnIa4kuc/dg==

ASV89

f100220 Location:

Summary Statistics: Max. 0.0314997649271274; Valid 78.0; Mean 0.0028401424402944484; StDev 0.00623320570644843; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:f4qZVEhm3fC93QXjFaFCFw==

ASV90

f100220 Location:

Summary Statistics: Min. 0.0; Max. 0.0644090305444887; Mean 0.004415309302608245; Valid 78.0; StDev 0.011855254647243735

Variable Format: numeric

Notes: UNF:6:iyH2qQGfXo4avG4gqomJoA==

ASV92

f100220 Location:

Summary Statistics: Valid 78.0; Min. 0.0; StDev 6.112728674511273E-4; Mean 2.339467251364642E-4; Max. 0.00278409090909091;

Variable Format: numeric

Notes: UNF:6:+MCSinBmodFk0De42fM2gg==

ASV95

f100220 Location:

Summary Statistics: Mean 0.004400254197195837; Min. 0.0; StDev 0.010501576296923377; Max. 0.0625059825787307; Valid 78.0

Variable Format: numeric

Notes: UNF:6:nrsnrLG7Mxm8NYgVamB4sg==

ASV97

f100220 Location:

Summary Statistics: Min. 0.0; StDev 0.007215702396412718; Valid 78.0; Max. 0.0551128072735436; Mean 0.002195058014967488

Variable Format: numeric

Notes: UNF:6:TFIXve5w9AcUu8V4JTYskA==

ASV99

f100220 Location:

Summary Statistics: Max. 0.0377358490566038; Valid 78.0; Min. 0.0; StDev 0.004276849950077249; Mean 5.335986812625323E-4

Variable Format: numeric

Notes: UNF:6:C3MxnY0u7VWktYbtMfBIpw==

ASV100

f100220 Location:

Summary Statistics: StDev 0.004610845692296399; Mean 0.0022647115445491206; Min. 0.0; Max. 0.0283971032673775; Valid 78.0;

Variable Format: numeric

Notes: UNF:6:8IN9wKA78joLOanpmQWy+Q==

ASV101

f100220 Location:

Summary Statistics: Mean 0.002235494126884172; Max. 0.0167828861836662; Min. 0.0; Valid 78.0; StDev 0.004291442527654701

Variable Format: numeric

Notes: UNF:6:/Ny3H0TG3IbkP5EbiOeygQ==

ASV104

f100220 Location:

Summary Statistics: Max. 0.369565217391304; Min. 0.0; Mean 0.007931961483013521; Valid 78.0; StDev 0.04230102856892429;

Variable Format: numeric

Notes: UNF:6:5+CwTXQVAz0X3XMYLj8Sog==

ASV105

f100220 Location:

Summary Statistics: Valid 78.0; Max. 0.136949572032587; Min. 0.0; Mean 0.009784367977323453; StDev 0.02662955171088519;

Variable Format: numeric

Notes: UNF:6:hgua4oOX/2lycnXbC1PsMw==

ASV107

f100220 Location:

Summary Statistics: Mean 0.0017798207658006225; Max. 0.0274933979669356; Min. 0.0; StDev 0.0041558714987530295; Valid 78.0

Variable Format: numeric

Notes: UNF:6:eJo3cV9MBXZgc8THrQVJuQ==

ASV108

f100220 Location:

Summary Statistics: Valid 78.0; Mean 0.0070241357296512005; Max. 0.12972234865726; Min. 0.0; StDev 0.020017085332125224

Variable Format: numeric

Notes: UNF:6:r3BKrRNebW+09ycKpeTR9w==

ASV109

f100220 Location:

Summary Statistics: Mean 0.0029186539534676727; Max. 0.0352925567201804; StDev 0.007408656961291231; Valid 78.0; Min. 0.0

Variable Format: numeric

Notes: UNF:6:P4EQKGoS/4c13VOO1BGVDw==

ASV111

f100220 Location:

Summary Statistics: StDev 0.01275977363279128; Min. 0.0; Valid 78.0; Mean 0.006880636414352203; Max. 0.0752293577981651;

Variable Format: numeric

Notes: UNF:6:jkaTRar9r0XqE2oLvYjD6w==

ASV115

f100220 Location:

Summary Statistics: Min. 0.0; StDev 0.009138331948970341; Max. 0.0474879559532003; Mean 0.0060188269494665025; Valid 78.0;

Variable Format: numeric

Notes: UNF:6:GOEN/ykE8czWqy8mgLOnEw==

ASV116

f100220 Location:

Summary Statistics: Valid 78.0; Min. 0.0; StDev 0.0013571677890303335; Max. 0.0101234225488837; Mean 3.728199125071972E-4;

Variable Format: numeric

Notes: UNF:6:XvmVBsP+6uZxRSxO+xLE+g==

ASV121

f100220 Location:

Summary Statistics: Valid 78.0; Min. 0.0; Max. 0.0482403433476395; StDev 0.00958975738284716; Mean 0.004488424890521527

Variable Format: numeric

Notes: UNF:6:GJNYSBOc5NesXoyUQPxbRw==

ASV123

f100220 Location:

Summary Statistics: Valid 78.0; StDev 0.005829750546391791; Max. 0.0386568634882134; Min. 0.0; Mean 0.002216643044412864

Variable Format: numeric

Notes: UNF:6:7Mz9EVHAFY672TBip/M1SA==

ASV126

f100220 Location:

Summary Statistics: Mean 0.005661451084477133; StDev 0.009715783008814469; Min. 0.0; Max. 0.0538558786346397; Valid 78.0;

Variable Format: numeric

Notes: UNF:6:rPQvMkSc0Gn3Y4HcK69Ujg==

ASV128

f100220 Location:

Summary Statistics: StDev 0.0027010762189130177; Mean 0.0010144623091919022; Min. 0.0; Max. 0.0180175529168818; Valid 78.0;

Variable Format: numeric

Notes: UNF:6:m9SQUgPmkam3P780QgefGQ==

ASV129

f100220 Location:

Summary Statistics: Min. 0.0; Valid 78.0; Mean 0.013371471613017128; StDev 0.07363053370404841; Max. 0.598496835443038

Variable Format: numeric

Notes: UNF:6:aGZandWnns0jfQSfpC+Kpw==

ASV134

f100220 Location:

Summary Statistics: Mean 0.0013533114371928519; Min. 0.0; Max. 0.00957178841309824; StDev 0.0022787174250310832; Valid 78.0

Variable Format: numeric

Notes: UNF:6:TyesyogkzZ810CoRn35Ctg==

ASV137

f100220 Location:

Summary Statistics: Valid 78.0; Max. 0.106901217861976; Min. 0.0; Mean 0.004017306798282426; StDev 0.015167137727419473

Variable Format: numeric

Notes: UNF:6:HZr41+ghIH/CbrUp1Kd5AQ==

ASV140

f100220 Location:

Summary Statistics: StDev 0.0064343949878549805; Valid 78.0; Max. 0.0327044025157233; Mean 0.0032108300929493583; Min. 0.0

Variable Format: numeric

Notes: UNF:6:ok90Ib2TKpWCEN+X+1R49g==

ASV142

f100220 Location:

Summary Statistics: Min. 0.0; Valid 78.0; Max. 0.0501287553648069; Mean 0.0023715600100015707; StDev 0.008083151192841871;

Variable Format: numeric

Notes: UNF:6:v/BOg13XKsDJf+FIeXyjuA==

ASV145

f100220 Location:

Summary Statistics: Mean 0.001025713955981024; Valid 78.0; Max. 0.0120822901926635; Min. 0.0; StDev 0.0022187845946375568

Variable Format: numeric

Notes: UNF:6:vJDNnfAEgWvTbZ5PUZaXRQ==

ASV147

f100220 Location:

Summary Statistics: Valid 78.0; StDev 0.004293287995908093; Max. 0.0199476782210595; Mean 0.002282456871481927; Min. 0.0

Variable Format: numeric

Notes: UNF:6:c9K/eZta6C300U5gRzbzuw==

ASV149

f100220 Location:

Summary Statistics: Max. 0.0069457005390153; Min. 0.0; Valid 78.0; Mean 1.9939897063142532E-4; StDev 9.81998914536932E-4

Variable Format: numeric

Notes: UNF:6:B/eX8qettSor9gLBQ1ZkIg==

ASV153

f100220 Location:

Summary Statistics: Mean 0.0018349040099119793; Valid 78.0; Max. 0.0297362804326593; Min. 0.0; StDev 0.0041940695209133905;

Variable Format: numeric

Notes: UNF:6:Qbf8A6x0VzzMpfhcW7/JcA==

ASV158

f100220 Location:

Summary Statistics: Mean 0.0010763000267762087; Valid 78.0; Max. 0.0210179792352494; Min. 0.0; StDev 0.0036727736942425582;

Variable Format: numeric

Notes: UNF:6:IgVsdIuROGXFH0TIJHhaLw==

ASV159

f100220 Location:

Summary Statistics: Mean 0.0015427068222923306; StDev 0.006625562241363208; Min. 0.0; Max. 0.0561661487152278; Valid 78.0;

Variable Format: numeric

Notes: UNF:6:8hhMPw7uQuqED+yKcGs5Ng==

ASV165

f100220 Location:

Summary Statistics: Mean 0.0016041820763321867; StDev 0.0044660148459836424; Valid 78.0; Max. 0.024549356223176; Min. 0.0

Variable Format: numeric

Notes: UNF:6:ZmJOrxf16c4eyqIvEuT6aA==

ASV168

f100220 Location:

Summary Statistics: Max. 0.0115670861105299; Valid 78.0; Mean 3.0172042813590694E-4; StDev 0.0013864414980349839; Min. 0.0

Variable Format: numeric

Notes: UNF:6:TH9oLkHmjs/tv4epThX8oA==

ASV170

f100220 Location:

Summary Statistics: Min. 0.0; StDev 0.00833008305586043; Mean 0.0016462727178686452; Valid 78.0; Max. 0.0680644066518345

Variable Format: numeric

Notes: UNF:6:b9RZfEki3EOH6zcEZKkbiQ==

ASV172

f100220 Location:

Summary Statistics: StDev 0.008138752539596908; Valid 78.0; Max. 0.0669116627374844; Min. 0.0; Mean 0.0015470245352557886

Variable Format: numeric

Notes: UNF:6:avfiwMxNvu/0b6qhVXOaBQ==

ASV173

f100220 Location:

Summary Statistics: Min. 0.0; Max. 0.00537395173712134; Mean 5.064602480960193E-4; StDev 0.0011278209122282188; Valid 78.0

Variable Format: numeric

Notes: UNF:6:FhWpfG1YrUljQTKpyg257w==

ASV183

f100220 Location:

Summary Statistics: Min. 0.0; Max. 0.014514896867838; Mean 6.08252323303066E-4; Valid 78.0; StDev 0.0019636572382114013

Variable Format: numeric

Notes: UNF:6:Khkibj2S792J+k1JCmHADQ==

ASV184

f100220 Location:

Summary Statistics: Min. 0.0; Mean 9.797548138009641E-4; Valid 78.0; StDev 0.0026673583221760782; Max. 0.0168434958510507

Variable Format: numeric

Notes: UNF:6:TGOORY4VM2sAcPnd7oZVdA==

ASV186

f100220 Location:

Summary Statistics: Valid 78.0; Min. 0.0; Mean 0.003237786166814176; Max. 0.0474918373404571; StDev 0.007778298419408103

Variable Format: numeric

Notes: UNF:6:JxTGdrmhisgBdeNpKZACNQ==

ASV187

f100220 Location:

Summary Statistics: Mean 6.065785184100938E-4; StDev 0.002191221260238857; Min. 0.0; Max. 0.0168372233704693; Valid 78.0

Variable Format: numeric

Notes: UNF:6:e145HCEwBEKTDYcVdZHAFA==

ASV189

f100220 Location:

Summary Statistics: Mean 0.0010743344229001471; Min. 0.0; Valid 78.0; StDev 0.0031050018139462767; Max. 0.0205738862498395

Variable Format: numeric

Notes: UNF:6:PiCDCLB0J9aw4fEMzdOvKg==

ASV190

f100220 Location:

Summary Statistics: Min. 0.0; StDev 0.002069761696509806; Max. 0.0106061470034784; Mean 8.244977775783226E-4; Valid 78.0;

Variable Format: numeric

Notes: UNF:6:Nl3OPwS0ESigblMcF1ROZA==

ASV194

f100220 Location:

Summary Statistics: StDev 0.004645515776447688; Max. 0.0283312999864444; Min. 0.0; Mean 0.0017314106131254847; Valid 78.0

Variable Format: numeric

Notes: UNF:6:I+10JdHIw7m6zeAEtOb77Q==

ASV198

f100220 Location:

Summary Statistics: Mean 0.002804387300011137; StDev 0.008724536290402127; Min. 0.0; Valid 78.0; Max. 0.0510745891276865

Variable Format: numeric

Notes: UNF:6:2euor5o7X8RsfmD78lUPMA==

ASV203

f100220 Location:

Summary Statistics: Mean 0.0011226172910174493; Valid 78.0; Max. 0.0169535732916015; Min. 0.0; StDev 0.002489041479309116

Variable Format: numeric

Notes: UNF:6:np/PI1uc0WZSUqMp5y6dZg==

ASV204

f100220 Location:

Summary Statistics: Valid 78.0; Min. 0.0; Mean 8.19619077546252E-4; Max. 0.0181222286485444; StDev 0.0025387399830602815

Variable Format: numeric

Notes: UNF:6:GMcECbHv45OnJ9PwDSqiQg==

ASV209

f100220 Location:

Summary Statistics: StDev 0.004245029877474087; Min. 0.0; Valid 78.0; Max. 0.0330744695603938; Mean 0.0013104646934230123;

Variable Format: numeric

Notes: UNF:6:c9UpICO96x8YuT3GK021ig==

ASV217

f100220 Location:

Summary Statistics: Min. 0.0; Mean 2.7282412944978804E-4; StDev 6.57064586707949E-4; Valid 78.0; Max. 0.00294117647058824;

Variable Format: numeric

Notes: UNF:6:ohwtV3G+6inNHkPotyllFQ==

ASV231

f100220 Location:

Summary Statistics: StDev 0.0018160626714461968; Mean 0.0010799258983095398; Min. 0.0; Valid 78.0; Max. 0.00749765698219306;

Variable Format: numeric

Notes: UNF:6:daE1XKAERWukMC5u22a7BA==

ASV241

f100220 Location:

Summary Statistics: Max. 0.013164687661332; Mean 4.4645916228392796E-4; StDev 0.0018630019281961746; Min. 0.0; Valid 78.0

Variable Format: numeric

Notes: UNF:6:AOnXF0Jo2LgrqjbeetXulQ==

ASV253

f100220 Location:

Summary Statistics: StDev 0.0030418274340493676; Mean 0.001270904009080757; Max. 0.0152231746970145; Min. 0.0; Valid 78.0;

Variable Format: numeric

Notes: UNF:6:fi7xb/82G91BMESBFhtV5Q==

ASV255

f100220 Location:

Summary Statistics: Mean 2.2340960555831564E-4; Valid 78.0; Max. 0.00448207171314741; Min. 0.0; StDev 6.225636130282074E-4

Variable Format: numeric

Notes: UNF:6:v7MvBSQ/PSn8u88MjTjlGQ==

ASV257

f100220 Location:

Summary Statistics: Valid 78.0; StDev 0.0014582929478345506; Min. 0.0; Max. 0.00706867964045728; Mean 7.784451315020396E-4;

Variable Format: numeric

Notes: UNF:6:tqysnamjW96T0WNywd74JQ==

ASV279

f100220 Location:

Summary Statistics: StDev 0.015149216625479715; Min. 0.0; Max. 0.128288907996561; Valid 78.0; Mean 0.0025390110956544833

Variable Format: numeric

Notes: UNF:6:L6wbB0RGT+ndOZcpv4d8og==

ASV281

f100220 Location:

Summary Statistics: Mean 5.723028034563628E-4; Min. 0.0; Max. 0.0111375016048273; Valid 78.0; StDev 0.0019509935481783198

Variable Format: numeric

Notes: UNF:6:DOUL1UcQqIoM/dEtwnbD5g==

ASV288

f100220 Location:

Summary Statistics: Mean 6.517254352905948E-4; Min. 0.0; Max. 0.0187603352910988; Valid 78.0; StDev 0.002378392965445146

Variable Format: numeric

Notes: UNF:6:894WBedqfg+Q+EUDgigPdg==

ASV289

f100220 Location:

Summary Statistics: Valid 78.0; Mean 0.0010711628979786553; Min. 0.0; StDev 0.0023970193108783853; Max. 0.0120546587953598

Variable Format: numeric

Notes: UNF:6:6IMs5OoQre3R4ynH77PEJQ==

ASV307

f100220 Location:

Summary Statistics: Max. 0.0599241466498104; Min. 0.0; StDev 0.007674270772567728; Mean 0.0018381977412573317; Valid 78.0

Variable Format: numeric

Notes: UNF:6:HlQQiDJzucnTA5lbU40SDA==

ASV318

f100220 Location:

Summary Statistics: Min. 0.0; Valid 78.0; Max. 0.0127935841130418; Mean 6.174676544625445E-4; StDev 0.0021637755436637275

Variable Format: numeric

Notes: UNF:6:GmpxvaiWBxzQfxA2/DLLNw==

ASV319

f100220 Location:

Summary Statistics: StDev 0.0030296289257459824; Min. 0.0; Valid 78.0; Max. 0.0179098728976762; Mean 7.156860127846858E-4

Variable Format: numeric

Notes: UNF:6:G0e878BMM9/05TnMUjEjUQ==

ASV334

f100220 Location:

Summary Statistics: Max. 0.00342875802764776; Min. 0.0; StDev 5.305691669954965E-4; Mean 1.484075800021472E-4; Valid 78.0;

Variable Format: numeric

Notes: UNF:6:SkZX4FWWykLSdBzCBmQ9JQ==

ASV337

f100220 Location:

Summary Statistics: Valid 78.0; Min. 0.0; Max. 0.00292347377472055; Mean 1.2478482247279006E-4; StDev 4.569015381049433E-4

Variable Format: numeric

Notes: UNF:6:RcU0BPasI5uqtveGf8eXeA==

ASV387

f100220 Location:

Summary Statistics: Mean 2.2209904065789644E-4; Max. 0.00685959271168274; Valid 78.0; StDev 9.575052521627204E-4; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:DcZgJcanezuIIEp3Zw3thQ==

ASV440

f100220 Location:

Summary Statistics: Mean 0.0013255108613403248; StDev 0.005935795979075084; Valid 78.0; Max. 0.0427672955974843; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:H6GXEyh9jwlDobLF2q5Jeg==

ASV444

f100220 Location:

Summary Statistics: Mean 5.464639731414191E-4; Valid 78.0; StDev 0.0033289409192036597; Min. 0.0; Max. 0.0253962192094711

Variable Format: numeric

Notes: UNF:6:6ML+bHgmhapWr1EhdBj2uA==

ASV478

f100220 Location:

Summary Statistics: Valid 78.0; Max. 0.00147513680704259; Min. 0.0; StDev 1.9147108178530444E-4; Mean 4.065871502355318E-5;

Variable Format: numeric

Notes: UNF:6:Ih3NS6SfawC7hSC0DgYbQw==

ASV618

f100220 Location:

Summary Statistics: Max. 0.00213903743315508; StDev 3.7145867462553064E-4; Min. 0.0; Valid 78.0; Mean 1.1625019329317494E-4

Variable Format: numeric

Notes: UNF:6:bA2IdtUlAa8mM39YaNpSUA==

ASV932

f100220 Location:

Summary Statistics: StDev 2.9117679428806667E-4; Valid 78.0; Max. 0.00119645848289064; Mean 1.062899328473943E-4; Min. 0.0

Variable Format: numeric

Notes: UNF:6:wqS+sqQCl0ROHXHieCJHow==

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associations_abundance.RData

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Results of the network built with the HMSC model (abundance)

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application/gzip

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Results of the network built with the HMSC model (presence-absence)

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ASV table

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Trait matrix used to run the HMSC models

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R script performing PCoA, GLMs and PERMANOVA and formatting the HMSC model results

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ASV taxonomic assignments

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Results of the network built with the HMSC model (abundance)

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Results of the network built with the HMSC model (presence-absence)

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