A dataset of 9.896 single nuclear polymorphisms for 112 wild grapes, obtained with the GrapeReSeq 18K Vitis chip  (ICPSR doi:10.15454/9RUCEP)

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Document Description

Citation

Title:

A dataset of 9.896 single nuclear polymorphisms for 112 wild grapes, obtained with the GrapeReSeq 18K Vitis chip

Identification Number:

doi:10.15454/9RUCEP

Distributor:

Portail Data INRAE

Date of Distribution:

2019-04-09

Version:

3

Bibliographic Citation:

Le Paslier, Marie-Christine; Choisne, Nathalie; Bacilieri, Roberto; Boursiquot, Jean-Michel; Bras, Marc; Brunel, Dominique; Chauveau, Aurélie; Hausmann, Ludger; Lacombe, Thierry; Laucou, Valérie; Launay, Amandine; Marchal, Cécile; Martinez-Zapater, José-Miguel; Berard, Aurélie; Quesneville, Hadi; Töpfer, Reinhard; Torres-Perez, Rafael; Adam-Blondon, Anne-Françoise, 2019, "A dataset of 9.896 single nuclear polymorphisms for 112 wild grapes, obtained with the GrapeReSeq 18K Vitis chip", https://doi.org/10.15454/9RUCEP, Portail Data INRAE, V3

Study Description

Citation

Title:

A dataset of 9.896 single nuclear polymorphisms for 112 wild grapes, obtained with the GrapeReSeq 18K Vitis chip

Subtitle:

In support of the paper : Palaeogenomic insights into the origins of French grapevine diversity

Identification Number:

doi:10.15454/9RUCEP

Authoring Entity:

Le Paslier, Marie-Christine (INRA - Institut National de la Recherche Agronomique)

Choisne, Nathalie (INRA - Institut National de la Recherche Agronomique)

Bacilieri, Roberto (INRA - Institut National de la Recherche Agronomique)

Boursiquot, Jean-Michel (Montpellier SupAgro)

Bras, Marc (INRA - Institut National de la Recherche Agronomique)

Brunel, Dominique (INRA - Institut National de la Recherche Agronomique)

Chauveau, Aurélie (INRA - Institut National de la Recherche Agronomique)

Hausmann, Ludger (Institute for Grapevine Breeding Geilweilerhof)

Lacombe, Thierry (INRA - Institut National de la Recherche Agronomique)

Laucou, Valérie (INRA - Institut National de la Recherche Agronomique)

Launay, Amandine (INRA - Institut National de la Recherche Agronomique)

Marchal, Cécile (INRA - Institut National de la Recherche Agronomique)

Martinez-Zapater, José-Miguel (Institute of Grapevine and Wine Sciences (ICVV))

Berard, Aurélie (INRA - Institut National de la Recherche Agronomique)

Quesneville, Hadi (INRA - Institut National de la Recherche Agronomique)

Töpfer, Reinhard (Institute for Grapevine Breeding Geilweilerhof)

Torres-Perez, Rafael (Institute of Grapevine and Wine Sciences (ICVV))

Adam-Blondon, Anne-Françoise (INRA - Institut National de la Recherche Agronomique)

Grant Number:

PLANT-KBBE-2008

Distributor:

Portail Data INRAE

Access Authority:

Bacilieri, Roberto

Depositor:

Bacilieri, Roberto

Date of Deposit:

2019-04-09

Series Name:

GrapeReSeq / Vitis vinifera subsp. sylvestris

Study Scope

Keywords:

Plant Breeding and Plant Products, Vitis, Grapes, grapevine, genetic diversity, SNP

Topic Classification:

Plant Science

Abstract:

The dataset, comprising 9.896 SNPs for 112 wild grapes (Vitis vinifera subsp. sylvestris), is made available here in support of the paper : Ramos-Madrigal J, Wiborg Runge AK, Bouby L, Lacombe T, Samaniego-Castruita JA, Adam-Blondon AF, Figueiral I, Hallavant C, Martínez-Zapater JM, Schaal C, Töpfer R, Petersen B, Sicheritz-Pontén T, This P, Bacilieri R, Gilbert MTP, Wales, 2019. Palaeogenomic insights into the origins of French grapevine diversity. Submitted to Nature Plants, 2019. These 9.869 SNPs are a subset of the 10.207 SNPs for cultivated grapes previously published by Le Paslier et al, 2018 (https://doi.org/10.15454/1.4861359557068474E12). Plant material was harvested in two grapevine collections (FAO WIEWS instcode FRA139 and DEU098), respectively: A) France, “INRA Domaine de Vassal, Marseillan-Plage” (http://www6.montpellier.inra.fr/vassal) ; and B) Germany, “JKI Geilweilerhof, Siebeldingen” (http://www.deutsche-genbank-reben.julius-kuehn.de/)

Time Period:

2009-01-01-2011-12-31

Kind of Data:

Dataset

Methodology and Processing

Sources Statement

Data Access

Notes:

<img src="https://www.etalab.gouv.fr/wp-content/uploads/2011/10/licence-ouverte-open-licence.gif" alt="Licence Ouverte" height="100"><a href="https://www.etalab.gouv.fr/licence-ouverte-open-licence">Licence Ouverte / Open Licence Version 2.0</a> compatible CC BY

Other Study Description Materials

Related Publications

Citation

Bibliographic Citation:

Ramos‐Madrigal J, Runge AK, Bouby L, Lacombe T, Castruita JAS, Adam‐Blondon AF, Figueiral I, Hallavant C, Martínez‐Zapater JM, Schaal C, Töpfer R, Petersen B, Sicheritz‐Pontén T, This P, Bacilieri R, Gilbert TP, Wales N, 2018. Palaeogenomic insights into the origins of French grapevine diversity. Nature Plants, in press

Other Study-Related Materials

Label:

genotypes_sylvestris.fam

Notes:

application/octet-stream

Other Study-Related Materials

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genotypes_SYLV_OUT.map

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application/octet-stream

Other Study-Related Materials

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genotypes_SYLV_OUT.ped

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application/octet-stream

Other Study-Related Materials

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passport-data-sylv.txt

Notes:

text/plain

Other Study-Related Materials

Label:

README.txt

Notes:

text/plain