Annotated list of species used in this study (ICPSR doi:10.15454/IIAQOW)

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Document Description

Citation

Title:

Annotated list of species used in this study

Identification Number:

doi:10.15454/IIAQOW

Distributor:

Portail Data INRAE

Date of Distribution:

2020-08-18

Version:

1

Bibliographic Citation:

Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Annotated list of species used in this study", https://doi.org/10.15454/IIAQOW, Portail Data INRAE, V1

Study Description

Citation

Title:

Annotated list of species used in this study

Identification Number:

doi:10.15454/IIAQOW

Authoring Entity:

Danchin, Etienne (INRA - Institut National de la Recherche Agronomique)

Grynberg, Priscila (EMBRAPA)

Togawa, Roberto (EMBRAPA)

Distributor:

Portail Data INRAE

Access Authority:

Danchin, Etienne

Depositor:

Danchin, Etienne

Date of Deposit:

2020-03-26

Study Scope

Keywords:

Biodiversity and Ecology, Omics, Plant Health and Pathology

Abstract:

Annotated list of the 63 species used in the Orthofinder comparative analysis of nematodes (61 species) and two tardigrade species as out-groups. <br> <br> Description: <br> Lines 1-64, definition of columns <br> - Abbrev Species: abbreviated species name. Species identifiers used in all the Orthofinder analysis. <br> - Species: Latin species name. <br> - BUSCO%: percentage of core eukaryotic proteins (odb9) found in full length by BUSCO V3 in the proteome. <br> - Proteins: number of predicted proteins <br> - Taxo: taxonomic group <br> - Hclade: Helder Clade classification according to 'Van Megen et al. A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences. Nematology. 2009' <br> - Bclade: Blaxter Clade classification according to '' <br> - Lifestyle: feeding style of the species <br> - Source: origin of the proteome file <br> - Reference: bibliographic references associated to the species genome paper <br> <br> Lines 66-108: full bibliographic refernces with Authors, Title, Journal and Year

Kind of Data:

Text

Methodology and Processing

Sources Statement

Data Access

Notes:

CC0 Waiver

Other Study Description Materials

Other Study-Related Materials

Label:

species-list-2020.txt

Text:

Annotated species list, tab-separated values

Notes:

text/plain