Bioinformatic and statistical scripts to analyze the leaf-associated fungal community of wild plant populations (ICPSR doi:10.15454/JQPBOW)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
Entire Codebook

Document Description

Citation

Title:

Bioinformatic and statistical scripts to analyze the leaf-associated fungal community of wild plant populations

Identification Number:

doi:10.15454/JQPBOW

Distributor:

Portail Data INRAE

Date of Distribution:

2020-03-09

Version:

2

Bibliographic Citation:

Ma, Yuxin, 2020, "Bioinformatic and statistical scripts to analyze the leaf-associated fungal community of wild plant populations", https://doi.org/10.15454/JQPBOW, Portail Data INRAE, V2, UNF:6:+Ms4XeqLMk3Aqhstq1K0Wg== [fileUNF]

Study Description

Citation

Title:

Bioinformatic and statistical scripts to analyze the leaf-associated fungal community of wild plant populations

Identification Number:

doi:10.15454/JQPBOW

Authoring Entity:

Ma, Yuxin (INRA - Institut National de la Recherche Agronomique)

Distributor:

Portail Data INRAE

Access Authority:

Ma, Yuxin

Depositor:

Ma, Yuxin

Date of Deposit:

2020-03-09

Study Scope

Keywords:

Microorganisms, Omics, Plant Health and Pathology

Abstract:

This dataset contains R-scripts to perform bioinformatic and statistical analysis on leaf-associated fungal communities of wild plant populations (Ma et al. Leaf-associated fungal and viral communities of wild plant populations differ between cultivated and natural ecosystems. Submitted). Raw sequences are available at https://doi.org/10.15454/X23KJF. Metadata and ASV tables are also provided allowing to use statistical analysis scripts without running the bioinformatic steps.

Methodology and Processing

Sources Statement

Data Access

Notes:

<img src="https://www.etalab.gouv.fr/wp-content/uploads/2011/10/licence-ouverte-open-licence.gif" alt="Licence Ouverte" height="100"><a href="https://www.etalab.gouv.fr/licence-ouverte-open-licence">Licence Ouverte / Open Licence Version 2.0</a> compatible CC BY

Other Study Description Materials

Related Publications

Citation

Bibliographic Citation:

Leaf-associated fungal and viral communities of wild plant populations differ between cultivated and natural ecosystems

File Description--f100091

File: ASV_table_its1_nov_plant.tab

  • Number of cases: 1575

  • No. of variables per record: 33

  • Type of File: text/tab-separated-values

Notes:

UNF:6:s0jWAOf9KjAaOZKW9OQu2A==

File Description--f100092

File: ASV_table_ITS2_nov_plant.tab

  • Number of cases: 898

  • No. of variables per record: 33

  • Type of File: text/tab-separated-values

Notes:

UNF:6:NWXc+qAxD6UQKbaqrlHg/A==

File Description--f99817

File: sample_table_its1_nov_plant.tab

  • Number of cases: 32

  • No. of variables per record: 11

  • Type of File: text/tab-separated-values

Notes:

UNF:6:G2Mf7HIJtfW+tmk+cUFVWw==

File Description--f99818

File: sample_table_ITS2_nov_plant.tab

  • Number of cases: 32

  • No. of variables per record: 11

  • Type of File: text/tab-separated-values

Notes:

UNF:6:nPOkIPrcPE8KwJm8hQn3/Q==

Variable Description

List of Variables:

Variables

ASV

f100091 Location:

Variable Format: character

Notes: UNF:6:8pAVElza/iS540LXyUa5yw==

ITS1-10P

f100091 Location:

Summary Statistics: Max. 22110.0; StDev 586.5986281187874; Mean 26.654603174602663; Min. 0.0; Valid 1575.0

Variable Format: numeric

Notes: UNF:6:T2xs9zBYIPS9VBmUYn+LpA==

ITS1-11P

f100091 Location:

Summary Statistics: Mean 23.73142857142911; StDev 388.80090922005; Valid 1575.0; Min. 0.0; Max. 14429.0

Variable Format: numeric

Notes: UNF:6:UJMqjh2n2j3jnRKpSCNZgQ==

ITS1-12P

f100091 Location:

Summary Statistics: Max. 7514.0; Mean 24.537777777777002; StDev 306.78693265382515; Valid 1575.0; Min. 0.0

Variable Format: numeric

Notes: UNF:6:MEtrh36aLmajdBySjegutw==

ITS1-13P

f100091 Location:

Summary Statistics: Max. 5035.0; StDev 204.02297084460957; Valid 1575.0; Mean 24.793015873015772; Min. 0.0

Variable Format: numeric

Notes: UNF:6:ane3JOP2qksBjQ/OsbwxoA==

ITS1-14P

f100091 Location:

Summary Statistics: Max. 5412.0; Min. 0.0; Valid 1575.0; Mean 19.207619047619627; StDev 196.7522244022331

Variable Format: numeric

Notes: UNF:6:/c2jGx4YGIlx234p0s6W7w==

ITS1-15P

f100091 Location:

Summary Statistics: Mean 27.760000000000588; StDev 289.88414554765365; Max. 9664.0; Min. 0.0; Valid 1575.0

Variable Format: numeric

Notes: UNF:6:GOnhWgh4GDEOO8qzjhvrIg==

ITS1-16P

f100091 Location:

Summary Statistics: Valid 1575.0; StDev 227.1538542964072; Mean 25.135873015873607; Max. 6211.0; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:cVEt+vFdwLn34maFphIK/Q==

ITS1-16Pprime

f100091 Location:

Summary Statistics: Valid 1575.0; Min. 0.0; Mean 17.78857142857092; Max. 5814.0; StDev 198.82392872649174

Variable Format: numeric

Notes: UNF:6:UrR0WjbbNl4CpY7hgSguZg==

ITS1-1P

f100091 Location:

Summary Statistics: Mean 26.659047619048298; Valid 1575.0; StDev 334.2075247109475; Min. 0.0; Max. 8871.0

Variable Format: numeric

Notes: UNF:6:zbWQ/btRjuN1Fmm9Rr1SWA==

ITS1-2P

f100091 Location:

Summary Statistics: StDev 215.56021510169217; Valid 1575.0; Min. 0.0; Max. 6057.0; Mean 18.987936507936862;

Variable Format: numeric

Notes: UNF:6:UPfelog+SrQGw+F8o3kPJQ==

ITS1-3P

f100091 Location:

Summary Statistics: Valid 1575.0; StDev 258.66742113701554; Max. 5762.0; Mean 27.325714285714668; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:9Oo7GHf0XE5qMxJku1zDQA==

ITS1-4P

f100091 Location:

Summary Statistics: Max. 10671.0; Valid 1575.0; Min. 0.0; StDev 389.63449740329753; Mean 23.74730158730205

Variable Format: numeric

Notes: UNF:6:TescJLWSvyAFcTNczyRJrQ==

ITS1-5P

f100091 Location:

Summary Statistics: Mean 22.879365079364213; Min. 0.0; Valid 1575.0; Max. 4598.0; StDev 185.66467204161955

Variable Format: numeric

Notes: UNF:6:Av2sHePeUUmNaxm22LPLEA==

ITS1-6P

f100091 Location:

Summary Statistics: Max. 5008.0; Mean 17.586666666666993; Min. 0.0; StDev 181.70220466935956; Valid 1575.0

Variable Format: numeric

Notes: UNF:6:nTP6a7xG9Yl8akVoUQN1VA==

ITS1-7P

f100091 Location:

Summary Statistics: StDev 174.91491826119545; Min. 0.0; Max. 3804.0; Valid 1575.0; Mean 24.46539682539768;

Variable Format: numeric

Notes: UNF:6:6B4EGbqPU1892rCQAU3QHQ==

ITS1-8P

f100091 Location:

Summary Statistics: Max. 6446.0; StDev 203.23608075308502; Valid 1575.0; Min. 0.0; Mean 19.095238095238493

Variable Format: numeric

Notes: UNF:6:AEPbVAn8ZseXCFaJIvoKBQ==

ITS1-9P

f100091 Location:

Summary Statistics: Mean 20.58857142857077; Min. 0.0; StDev 361.97797306243405; Max. 13555.0; Valid 1575.0;

Variable Format: numeric

Notes: UNF:6:IcFr7GzD39jaL/MSBorcUw==

ITS1-9Pprime

f100091 Location:

Summary Statistics: StDev 268.0307624219479; Max. 9673.0; Valid 1575.0; Min. 0.0; Mean 18.278730158729903;

Variable Format: numeric

Notes: UNF:6:FrluXpEAkfrHPGANzNUynA==

ITS1-10D

f100091 Location:

Summary Statistics: Mean 17.511746031746657; StDev 499.85073981334665; Max. 19794.0; Min. 0.0; Valid 1575.0;

Variable Format: numeric

Notes: UNF:6:eTAgKtpZ+g6j1/ANGgmnJg==

ITS1-11D

f100091 Location:

Summary Statistics: StDev 489.09145787461114; Mean 28.590476190476966; Min. 0.0; Valid 1575.0; Max. 17931.0

Variable Format: numeric

Notes: UNF:6:lRCGRuoM3QQHsuS7Ao1SPQ==

ITS1-12D

f100091 Location:

Summary Statistics: Min. 0.0; StDev 195.74167774732172; Valid 1575.0; Max. 6247.0; Mean 14.763809523809407;

Variable Format: numeric

Notes: UNF:6:AAM/UtZRZp8qkvpcV1cJ9Q==

ITS1-13D

f100091 Location:

Summary Statistics: StDev 200.62363446080994; Mean 25.69079365079434; Min. 0.0; Valid 1575.0; Max. 4598.0

Variable Format: numeric

Notes: UNF:6:QzEkKd/5xIfGCoFN0yLDZw==

ITS1-14D

f100091 Location:

Summary Statistics: Min. 0.0; StDev 237.62864780723032; Max. 6887.0; Mean 19.833015873015654; Valid 1575.0;

Variable Format: numeric

Notes: UNF:6:XxgAmVatIuZdARHu5eYB4g==

ITS1-15D

f100091 Location:

Summary Statistics: Max. 6584.0; Min. 0.0; StDev 223.94749038965153; Mean 24.91301587301618; Valid 1575.0;

Variable Format: numeric

Notes: UNF:6:7R4fIY+7WXAuDb3od0R/xw==

ITS1-1D

f100091 Location:

Summary Statistics: Min. 0.0; Max. 7610.0; StDev 298.3660690310125; Valid 1575.0; Mean 24.73904761904693;

Variable Format: numeric

Notes: UNF:6:uIy0HMn1fFwC2XXZiFcGbA==

ITS1-2D

f100091 Location:

Summary Statistics: Valid 1575.0; StDev 158.5563128863115; Min. 0.0; Mean 14.67365079365049; Max. 4444.0;

Variable Format: numeric

Notes: UNF:6:ZvHWTJLbgcZ0jJp3gFbIRA==

ITS1-3D

f100091 Location:

Summary Statistics: Max. 4740.0; Min. 0.0; Mean 23.190476190475533; Valid 1575.0; StDev 224.50743607864035;

Variable Format: numeric

Notes: UNF:6:k9XglrGuxHJHBOHbweBrYQ==

ITS1-4D

f100091 Location:

Summary Statistics: Mean 17.980952380952154; Valid 1575.0; Min. 0.0; StDev 303.33343024435305; Max. 8956.0

Variable Format: numeric

Notes: UNF:6:cDwfEGsgyAlgJb13Ygf4WA==

ITS1-5D

f100091 Location:

Summary Statistics: StDev 174.0177776786774; Valid 1575.0; Min. 0.0; Max. 4250.0; Mean 20.326349206349533

Variable Format: numeric

Notes: UNF:6:NObarKGWU/u95o/YJK1C1Q==

ITS1-6D

f100091 Location:

Summary Statistics: Valid 1575.0; StDev 261.6278494604809; Min. 0.0; Max. 7682.0; Mean 23.194920634921118

Variable Format: numeric

Notes: UNF:6:/xH2I4NjE04vQ8cMedcjng==

ITS1-7D

f100091 Location:

Summary Statistics: Min. 0.0; Max. 3389.0; Mean 22.83873015872942; Valid 1575.0; StDev 166.8673758305023;

Variable Format: numeric

Notes: UNF:6:QLQxEudrAmwD5gCJ3hzstA==

ITS1-8D

f100091 Location:

Summary Statistics: Min. 0.0; Valid 1575.0; Mean 22.698412698412163; Max. 6695.0; StDev 233.79887117764184

Variable Format: numeric

Notes: UNF:6:7Z7MhQLkzr/Fi8qIGPUYcw==

ASV

f100092 Location:

Variable Format: character

Notes: UNF:6:yetGx/bqjvx17LuCRwSsfA==

ITS2-10P

f100092 Location:

Summary Statistics: StDev 448.03948627157786; Max. 12778.0; Mean 27.942093541202652; Valid 898.0; Min. 0.0

Variable Format: numeric

Notes: UNF:6:PwFGR1iR+6HsSlUPzhiMQg==

ITS2-11P

f100092 Location:

Summary Statistics: Valid 898.0; StDev 308.5000753012266; Min. 0.0; Mean 26.364142538975237; Max. 8256.0;

Variable Format: numeric

Notes: UNF:6:ms2BN+SKX6WkBs6vy2lgug==

ITS2-12P

f100092 Location:

Summary Statistics: StDev 132.87736099867772; Max. 2459.0; Mean 16.929844097995908; Min. 0.0; Valid 898.0;

Variable Format: numeric

Notes: UNF:6:C00nhzODH0H6sGg+bXoD1A==

ITS2-13P

f100092 Location:

Summary Statistics: Valid 898.0; Max. 11337.0; StDev 393.2894329074415; Mean 33.49888641425362; Min. 0.0

Variable Format: numeric

Notes: UNF:6:4L9MUOQP/gAiwEFe7wqg3A==

ITS2-14P

f100092 Location:

Summary Statistics: StDev 108.99017575901199; Min. 0.0; Mean 13.997772828507898; Max. 2603.0; Valid 898.0;

Variable Format: numeric

Notes: UNF:6:yTKAwPuxqT0O/CoXOelUFg==

ITS2-15P

f100092 Location:

Summary Statistics: Min. 0.0; Max. 3943.0; StDev 207.71517820239734; Mean 24.832962138084522; Valid 898.0

Variable Format: numeric

Notes: UNF:6:WnR7YrVtIiMgxKCeueLlcA==

ITS2-16P

f100092 Location:

Summary Statistics: StDev 193.58867683394615; Max. 5642.0; Mean 11.433184855233918; Min. 0.0; Valid 898.0

Variable Format: numeric

Notes: UNF:6:2+kqo902DSsfE4oSQX5Kkg==

ITS2-16Pprime

f100092 Location:

Summary Statistics: StDev 144.9685555952317; Mean 23.935412026726414; Min. 0.0; Valid 898.0; Max. 2312.0

Variable Format: numeric

Notes: UNF:6:YXEScjJW+4ZBvgoLzLNT+Q==

ITS2-1P

f100092 Location:

Summary Statistics: Mean 20.554565701558936; Min. 0.0; Valid 898.0; StDev 161.37354902784378; Max. 2558.0

Variable Format: numeric

Notes: UNF:6:lHQikaOvII+w4OIPblRVFg==

ITS2-2P

f100092 Location:

Summary Statistics: Mean 14.7672605790644; Max. 6242.0; Valid 898.0; Min. 0.0; StDev 228.78190935571826

Variable Format: numeric

Notes: UNF:6:dt1lZF+ri3U7wUjDpiXqSw==

ITS2-3P

f100092 Location:

Summary Statistics: StDev 271.4376213496093; Min. 0.0; Mean 27.16035634743905; Valid 898.0; Max. 6615.0

Variable Format: numeric

Notes: UNF:6:nl0JQhEJXf+gS345C4PNgg==

ITS2-4P

f100092 Location:

Summary Statistics: Max. 6699.0; Valid 898.0; StDev 248.46922649852561; Min. 0.0; Mean 20.00222717149251

Variable Format: numeric

Notes: UNF:6:rBjYZQx4YHsMxqmjdaeFVw==

ITS2-5P

f100092 Location:

Summary Statistics: StDev 172.57419647714488; Valid 898.0; Min. 0.0; Mean 30.278396436525252; Max. 2627.0

Variable Format: numeric

Notes: UNF:6:YZxd/xMgzs5JSdKkw5hTJw==

ITS2-6P

f100092 Location:

Summary Statistics: Max. 1499.0; Mean 19.446547884187396; Valid 898.0; StDev 129.71817464023317; Min. 0.0

Variable Format: numeric

Notes: UNF:6:wl77NRxiCnAVoF+xDb+ARQ==

ITS2-7P

f100092 Location:

Summary Statistics: Min. 0.0; StDev 184.09929687059557; Max. 2742.0; Mean 32.45100222717143; Valid 898.0

Variable Format: numeric

Notes: UNF:6:oNkZC+BYf+oqkiLCkHgh2w==

ITS2-8P

f100092 Location:

Summary Statistics: Min. 0.0; Max. 6810.0; Valid 898.0; StDev 266.6033443997161; Mean 22.233853006681827

Variable Format: numeric

Notes: UNF:6:1Em6PnBtr0uacLE+QorHAA==

ITS2-9P

f100092 Location:

Summary Statistics: Max. 7011.0; StDev 241.49312276065587; Mean 17.289532293987005; Min. 0.0; Valid 898.0;

Variable Format: numeric

Notes: UNF:6:o6OAwXPSd5Oj0G8k76e70Q==

ITS2-9Pprime

f100092 Location:

Summary Statistics: StDev 229.36959219918882; Min. 0.0; Valid 898.0; Max. 5213.0; Mean 23.29732739420924;

Variable Format: numeric

Notes: UNF:6:Fk0+aFPorS5l2ovXN4cVNg==

ITS2-10D

f100092 Location:

Summary Statistics: Valid 898.0; Max. 8088.0; Min. 0.0; StDev 287.7281239467915; Mean 16.708240534521334

Variable Format: numeric

Notes: UNF:6:nbJtWwAim0cvtfg2pfRMvw==

ITS2-11D

f100092 Location:

Summary Statistics: Min. 0.0; Max. 7573.0; StDev 264.4722423719068; Mean 18.610244988864263; Valid 898.0

Variable Format: numeric

Notes: UNF:6:NqTAvAPtjdcfnvK+oInW8Q==

ITS2-12D

f100092 Location:

Summary Statistics: Mean 16.212694877505392; Max. 2410.0; Min. 0.0; Valid 898.0; StDev 132.18840805182256

Variable Format: numeric

Notes: UNF:6:hNNP5kpcwKgHMbtCcCB6zQ==

ITS2-13D

f100092 Location:

Summary Statistics: Mean 25.991091314030882; Max. 9871.0; Min. 0.0; StDev 339.6991421345176; Valid 898.0

Variable Format: numeric

Notes: UNF:6:UOMIjN7CpC8Yv+54mU6o0A==

ITS2-14D

f100092 Location:

Summary Statistics: Valid 898.0; Min. 0.0; StDev 111.01178794083978; Mean 15.350779510022106; Max. 2429.0;

Variable Format: numeric

Notes: UNF:6:nM5Th/JMyx5JNMDTGpalzg==

ITS2-15D

f100092 Location:

Summary Statistics: Valid 898.0; StDev 209.65278736928457; Min. 0.0; Max. 4006.0; Mean 24.560133630289354

Variable Format: numeric

Notes: UNF:6:EY0W7jLiqMNruHsM41Xx8A==

ITS2-1D

f100092 Location:

Summary Statistics: Mean 27.072383073496486; Max. 2868.0; Valid 898.0; StDev 194.15999302917066; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:elhpD8CYwfGl6WDXv3U0gQ==

ITS2-2D

f100092 Location:

Summary Statistics: StDev 193.10097549284333; Mean 17.755011135857238; Valid 898.0; Min. 0.0; Max. 4799.0

Variable Format: numeric

Notes: UNF:6:Z8fOdQDgN8mR0xFip4NQdw==

ITS2-3D

f100092 Location:

Summary Statistics: Min. 0.0; Max. 6152.0; Valid 898.0; Mean 26.331848552338986; StDev 252.1972585116957;

Variable Format: numeric

Notes: UNF:6:sWCTTjKKbtueAS8X5M6X8Q==

ITS2-4D

f100092 Location:

Summary Statistics: StDev 243.3593267651013; Mean 30.50779510022236; Valid 898.0; Max. 3878.0; Min. 0.0

Variable Format: numeric

Notes: UNF:6:kIrFj4qyH2tPmcbfQslF0g==

ITS2-5D

f100092 Location:

Summary Statistics: Valid 898.0; StDev 171.21094169119988; Max. 2659.0; Mean 28.4866369710465; Min. 0.0

Variable Format: numeric

Notes: UNF:6:tjmeyosRt2F7ntCMrjhLxQ==

ITS2-6D

f100092 Location:

Summary Statistics: StDev 178.86472762647765; Min. 0.0; Mean 26.690423162583514; Max. 2173.0; Valid 898.0;

Variable Format: numeric

Notes: UNF:6:25JQHPye8KZs6xPBTYkFbg==

ITS2-7D

f100092 Location:

Summary Statistics: StDev 152.0455999987286; Valid 898.0; Mean 28.80957683741644; Max. 2091.0; Min. 0.0

Variable Format: numeric

Notes: UNF:6:FBB+Cm6Ahh1tbCi9OoyaIw==

ITS2-8D

f100092 Location:

Summary Statistics: Valid 898.0; Min. 0.0; StDev 462.2908192504499; Mean 43.76169265033492; Max. 13035.0

Variable Format: numeric

Notes: UNF:6:mBuJqOD6L/L6/67QRGvorA==

ID

f99817 Location:

Variable Format: character

Notes: UNF:6:htOg4RmCdvtG7azfT+l/WQ==

Sample_type

f99817 Location:

Variable Format: character

Notes: UNF:6:m0kEM5JLQPKhv8d8S1wQeg==

Sampling_date

f99817 Location:

Variable Format: character

Notes: UNF:6:5OJExFnjcoBAZT2pjRhpCw==

No_individual_plants

f99817 Location:

Summary Statistics: Valid 32.0; StDev 3.3834273518373776; Max. 60.0; Mean 50.3125; Min. 48.0

Variable Format: numeric

Notes: UNF:6:HW2l3gk0hDyWufKn9IWYFQ==

No_plant_species

f99817 Location:

Summary Statistics: Valid 32.0; Max. 10.0; Min. 7.0; Mean 8.5; StDev 1.1359236684941296;

Variable Format: numeric

Notes: UNF:6:7ibAMDKvwgIjdugoWtSk3Q==

Site

f99817 Location:

Variable Format: character

Notes: UNF:6:Og1v6QOWhRa683HJBDymdQ==

Ecosystem_type

f99817 Location:

Variable Format: character

Notes: UNF:6:+q/gfnAMNV0H0VZmoI9Mjg==

Extraction_kit

f99817 Location:

Variable Format: character

Notes: UNF:6:3O7cCxD6b0w8A1VAUd1GsA==

Region

f99817 Location:

Variable Format: character

Notes: UNF:6:u6b7Z3tspuE1VNK3dT41PA==

Sequencing_depth

f99817 Location:

Summary Statistics: Max. 45030.0; Mean 34953.59375; StDev 5973.859339680025; Min. 23111.0; Valid 32.0

Variable Format: numeric

Notes: UNF:6:/9MYaWYgRLfXT2Zev+CyPA==

Sample_pool

f99817 Location:

Variable Format: character

Notes: UNF:6:9Jr0gHbAF0a3CS1NgY31Pg==

ID

f99818 Location:

Variable Format: character

Notes: UNF:6:bCEsFOjdm+KVxj1Pm0ClIw==

Sample_type

f99818 Location:

Variable Format: character

Notes: UNF:6:m0kEM5JLQPKhv8d8S1wQeg==

Sampling_date

f99818 Location:

Variable Format: character

Notes: UNF:6:5OJExFnjcoBAZT2pjRhpCw==

No_individual_plants

f99818 Location:

Summary Statistics: StDev 3.3834273518373776; Valid 32.0; Max. 60.0; Mean 50.3125; Min. 48.0;

Variable Format: numeric

Notes: UNF:6:HW2l3gk0hDyWufKn9IWYFQ==

No_plant_species

f99818 Location:

Summary Statistics: Valid 32.0; Min. 7.0; StDev 1.1359236684941296; Max. 10.0; Mean 8.5

Variable Format: numeric

Notes: UNF:6:7ibAMDKvwgIjdugoWtSk3Q==

Site

f99818 Location:

Variable Format: character

Notes: UNF:6:Og1v6QOWhRa683HJBDymdQ==

Ecosystem_type

f99818 Location:

Variable Format: character

Notes: UNF:6:+q/gfnAMNV0H0VZmoI9Mjg==

Extraction_kit

f99818 Location:

Variable Format: character

Notes: UNF:6:3O7cCxD6b0w8A1VAUd1GsA==

Region

f99818 Location:

Variable Format: character

Notes: UNF:6:u6b7Z3tspuE1VNK3dT41PA==

Sequencing_depth

f99818 Location:

Summary Statistics: Max. 39298.0; Mean 21138.46875; StDev 6195.817668366064; Min. 10267.0; Valid 32.0

Variable Format: numeric

Notes: UNF:6:2eWCa8sUnvshSWlgm6aZyQ==

Sample_pool

f99818 Location:

Variable Format: character

Notes: UNF:6:9Jr0gHbAF0a3CS1NgY31Pg==

Other Study-Related Materials

Label:

ps.ITS1.plant.RDS

Text:

ITS1 phyloseq project

Notes:

application/gzip

Other Study-Related Materials

Label:

ps.ITS2.plant.RDS

Text:

ITS2 phyloseq project

Notes:

application/gzip

Other Study-Related Materials

Label:

Script_R1_ITS1_dada2_processing.Rmd

Text:

ITS1 Data processing with pipeline DADA2

Notes:

application/octet-stream

Other Study-Related Materials

Label:

Script_R1_ITS2_dada2_processing.Rmd

Text:

ITS2 Data processing with pipeline DADA2

Notes:

application/octet-stream

Other Study-Related Materials

Label:

Statistical_analysis_ITS1_Yuxin_June_2020.Rmd

Text:

Bioinformatics for fungal community analysis (PCoA, GLMMs and PERMANOVA)-ITS1 dataset

Notes:

application/octet-stream

Other Study-Related Materials

Label:

Statistical_analysis_ITS2_Yuxin_June_2020.Rmd

Text:

Bioinformatics for fungal community analysis (PCoA, GLMMs and PERMANOVA)-ITS12 dataset

Notes:

application/octet-stream

Other Study-Related Materials

Label:

taxa_table_its1_nov.csv

Text:

fungal taxa table-ITS1

Notes:

text/csv

Other Study-Related Materials

Label:

taxa_table_ITS2_nov.csv

Text:

fungal taxa table-ITS2

Notes:

text/csv