Shad spawning and energy expenditure (ICPSR doi:10.15454/NTFYCC)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
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Document Description

Citation

Title:

Shad spawning and energy expenditure

Identification Number:

doi:10.15454/NTFYCC

Distributor:

Portail Data INRAE

Date of Distribution:

2020-06-08

Version:

1

Bibliographic Citation:

Cédric Tentelier; Colin Bouchard; Anaïs Bernardin; Amandine Tauzin; Jean-Christophe Aymes; Frédéric Lange; Charlotte Récapet; Jacques Rives, 2020, "Shad spawning and energy expenditure", https://doi.org/10.15454/NTFYCC, Portail Data INRAE, V1, UNF:6:75sSWRAS9IYc6ivhhJxNcA== [fileUNF]

Study Description

Citation

Title:

Shad spawning and energy expenditure

Identification Number:

doi:10.15454/NTFYCC

Authoring Entity:

Cédric Tentelier (Universite de Pau et des Pays de l’Adour, E2S UPPA, INRAE, ECOBIOP, Saint-Pée-sur-Nivelle, France)

Colin Bouchard (Tour du Valat, Research Institute for the Conservation of Mediterranean Wetlands, Arles, France)

Anaïs Bernardin (Universite de Pau et des Pays de l’Adour, E2S UPPA, INRAE, ECOBIOP, Saint-Pée-sur-Nivelle, France)

Amandine Tauzin (Universite de Pau et des Pays de l’Adour, E2S UPPA, INRAE, ECOBIOP, Saint-Pée-sur-Nivelle, France)

Jean-Christophe Aymes (Universite de Pau et des Pays de l’Adour, E2S UPPA, INRAE, ECOBIOP, Saint-Pée-sur-Nivelle, France)

Frédéric Lange (Universite de Pau et des Pays de l’Adour, E2S UPPA, INRAE, ECOBIOP, Saint-Pée-sur-Nivelle, France)

Charlotte Récapet (Universite de Pau et des Pays de l’Adour, E2S UPPA, INRAE, ECOBIOP, Saint-Pée-sur-Nivelle, France)

Jacques Rives (Universite de Pau et des Pays de l’Adour, E2S UPPA, INRAE, ECOBIOP, Saint-Pée-sur-Nivelle, France)

Distributor:

Portail Data INRAE

Access Authority:

Tentelier, Cedric

Depositor:

Tentelier, Cedric

Date of Deposit:

2020-06-08

Study Scope

Keywords:

Biodiversity and Ecology, Fishes and Aquaculture

Abstract:

This dataset is from an experiment in which nine female Allis shad (Alosa alosa) were tagged with loggers (WACU, Atesys-Montoux) which recorded tri-axial acceleration (8g, 50Hz), temperature (1Hz) and pressure (1Hz) during the 2017 spawning season in the Nivelle river. A characteristic acceleration pattern was used to detect spawning acts. Acceleration on the lateral axis was used to compute tail beat frequency, which coupled with temperature, was fed in a bioenergetic model to compute energy expenditure and mass loss. Pressure was coupled with pressure recorded near the river to compute depth. The static component of acceleration was used to compute the angle of the dorsally attached logger with the vertical. The dataset is composed of four files containing: 1) The exact timing of each spawning act of each shad. 2) The number of spawning acts performed by each shad on each night of the season, with water temperature during the night. 3) For each shad and each 8h period of the spawning season, the angle between the logger and the vertical (°), the angle shift to the next period (°), the mean temperature (°C), the mean pressure (hPa), the mean depth (cm), the mean tail beat frequency (beat/s), the cumulated energy expenditure (kJ) according to the bioenergetic model, the mass (kg) according to the bioenergetic model, an indicator variable whether the fish had been tagged for less (1) or more (0) than three days. 4) For each shad, biometric measures (length, mass at initial capture and at death, ovary mass at death), timing of capture and death, as well as variables computed from acceleration data (number of spawning acts, number of nights with at least one spawning act, total energy spent, predicted mass at death, angle of the logger at initial capture and at death). The dataset is accompanied by a Rmd script of the analyses performed on the dataset for the article found here: https://doi.org/10.1101/436295

Kind of Data:

Dataset

Methodology and Processing

Sources Statement

Data Access

Notes:

<img src="https://www.etalab.gouv.fr/wp-content/uploads/2011/10/licence-ouverte-open-licence.gif" alt="Licence Ouverte" height="100"><a href="https://www.etalab.gouv.fr/licence-ouverte-open-licence">Licence Ouverte / Open Licence Version 2.0</a> compatible CC BY

Other Study Description Materials

Related Publications

Citation

Identification Number:

10.1101/436295

Bibliographic Citation:

Tentelier et al (2020) The dynamics of spawning acts by a semelparous fish and its associated energetic expenses, BiorXiv, https://doi.org/10.1101/436295

File Description--f99667

File: by_8h_periods.tab

  • Number of cases: 653

  • No. of variables per record: 1

  • Type of File: text/tab-separated-values

Notes:

UNF:6:g/bQRWizzZdTyZR59rFL7A==

File Description--f99666

File: spawning_time.tab

  • Number of cases: 123

  • No. of variables per record: 1

  • Type of File: text/tab-separated-values

Notes:

UNF:6:5lKcjXUFAC4PseAxk5EwRA==

Variable Description

List of Variables:

Variables

indiv;date;time;date.time;theta;diff.theta;mean.temp;mean.pres;mean.depth;mean.tbf;mean.swim.speed;cum.energy;mean.mass;just.tagged

f99667 Location:

Variable Format: character

Notes: UNF:6:g/bQRWizzZdTyZR59rFL7A==

indiv;moment;date;time

f99666 Location:

Variable Format: character

Notes: UNF:6:5lKcjXUFAC4PseAxk5EwRA==

Other Study-Related Materials

Label:

analysis_shad.Rmd

Text:

Rmd script (open with RStudio with rmarkdown library installed) of the analyses performed on the dataset for the article found here: https://doi.org/10.1101/436295. Remember to paste the path to your local copy of data files when necessary.

Notes:

application/octet-stream

Other Study-Related Materials

Label:

data_indiv.csv

Text:

For each shad, biometric measures (length, mass at initial capture and at death, ovary mass at death), timing of capture and death, as well as variables computed from acceleration data (number of spawning acts, number of nights with at least one spawning act, total energy spent, predicted mass at death, angle of the logger at initial capture and at death).

Notes:

text/csv

Other Study-Related Materials

Label:

spawning_nights.csv

Text:

The number of spawning acts performed by each shad on each night of the season, with water temperature during the night.

Notes:

text/csv