1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type (ICPSR doi:10.15454/RCGZZR)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
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Document Description

Citation

Title:

1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

Identification Number:

doi:10.15454/RCGZZR

Distributor:

Portail Data INRAE

Date of Distribution:

2020-06-30

Version:

2

Bibliographic Citation:

Deborde, Catherine, 2020, "1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type", https://doi.org/10.15454/RCGZZR, Portail Data INRAE, V2, UNF:6:XTfzUN9Uy4U+BCLOvg/pBw== [fileUNF]

Study Description

Citation

Title:

1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

Identification Number:

doi:10.15454/RCGZZR

Authoring Entity:

Deborde, Catherine (INRA - Institut National de la Recherche Agronomique)

Other identifications and acknowledgements:

Musseau Constance

Other identifications and acknowledgements:

Moing Annick

Other identifications and acknowledgements:

Fernandez-Lochu Lucie

Distributor:

Portail Data INRAE

Access Authority:

Deborde, Catherine

Depositor:

Deborde, Catherine

Date of Deposit:

2020-06-26

Study Scope

Keywords:

Omics, Plant Breeding and Plant Products

Abstract:

1D <sup>1</sup>H-NMR metabolomic profiling of 15 DPA, 20 DPA, 25 DPA and Breaker fruit pericarp from the WT, <i>gbp1-c4 </i> and <i>gbp1-c8</i> independent mutant lines of tomato.

Kind of Data:

Dataset

Kind of Data:

Other

Methodology and Processing

Sources Statement

Data Access

Notes:

<img src="https://www.etalab.gouv.fr/wp-content/uploads/2011/10/licence-ouverte-open-licence.gif" alt="Licence Ouverte" height="100"><a href="https://www.etalab.gouv.fr/licence-ouverte-open-licence">Licence Ouverte / Open Licence Version 2.0</a> compatible CC BY

Other Study Description Materials

Related Publications

Citation

Bibliographic Citation:

C. Musseau, J. Jorly, S. Gadin, I. Sørensen, C. Deborde, S. Bernillon, JP. Mauxion, I. Atienza, A. Moing, M. Lemaire-Chamley, JKC. Rose, C. Chevalier, C. Rothan, L. Fernandez-Lochu, F. Gévaudant. (2020) The tomato Guanylate-Binding-Protein SlGBP1 maintains fruit tissue differentiation by maintaining endopolyploid cells in a non-proliferative state. Plant Cell, (in Press)

Citation

Bibliographic Citation:

Constance Musseau, 14-12-2018 Towards the identification and characterization of new regulators of fruit tissue morphology. Thèse de doctorat en Biologie Végétale de l'Université de Bordeaux. http://www.theses.fr/fr/2018BORD0355

File Description--f99988

File: Summary of NMR annotation of semi-polar extracts of tomato fruit pericarp.tab

  • Number of cases: 31

  • No. of variables per record: 16

  • Type of File: text/tab-separated-values

Notes:

UNF:6:XTfzUN9Uy4U+BCLOvg/pBw==

Variable Description

List of Variables:

Variables

ThetomatoGuanylate-Binding-ProteinSlGBP1maintainsfruittissuedifferentiationbymaintainingendopolyploidcellsinanon-proliferativestate

f99988 Location:

Variable Format: character

Notes: UNF:6:Xjd89frjxUjd3LBCu9neDw==

B

f99988 Location:

Summary Statistics: Min. NaN; StDev NaN; Mean NaN; Max. NaN; Valid 0.0

Variable Format: numeric

Notes: UNF:6:28/Md/V3TtMzPzlj64SjJA==

C

f99988 Location:

Variable Format: character

Notes: UNF:6:LzFnw17eJIZbMJ6TrUO1CA==

D

f99988 Location:

Variable Format: character

Notes: UNF:6:xwF2gBYRIWwjfj9ldrXG4g==

E

f99988 Location:

Variable Format: character

Notes: UNF:6:3uP5bta3Qn2bINEjRoGoTw==

F

f99988 Location:

Variable Format: character

Notes: UNF:6:A5vjlhFAIyG08O0/vcqXLA==

G

f99988 Location:

Variable Format: character

Notes: UNF:6:aZuAp93V4IL7Tt9AkncsXQ==

H

f99988 Location:

Summary Statistics: Max. NaN; Min. NaN; Mean NaN; Valid 0.0; StDev NaN

Variable Format: numeric

Notes: UNF:6:28/Md/V3TtMzPzlj64SjJA==

I

f99988 Location:

Summary Statistics: Min. NaN; Valid 0.0; Max. NaN; StDev NaN; Mean NaN

Variable Format: numeric

Notes: UNF:6:28/Md/V3TtMzPzlj64SjJA==

J

f99988 Location:

Summary Statistics: Max. NaN; StDev NaN; Valid 0.0; Min. NaN; Mean NaN

Variable Format: numeric

Notes: UNF:6:28/Md/V3TtMzPzlj64SjJA==

K

f99988 Location:

Summary Statistics: Max. NaN; Min. NaN; StDev NaN; Mean NaN; Valid 0.0;

Variable Format: numeric

Notes: UNF:6:28/Md/V3TtMzPzlj64SjJA==

L

f99988 Location:

Summary Statistics: Valid 0.0; Min. NaN; Mean NaN; StDev NaN; Max. NaN;

Variable Format: numeric

Notes: UNF:6:28/Md/V3TtMzPzlj64SjJA==

M

f99988 Location:

Summary Statistics: Min. NaN; Valid 0.0; Max. NaN; Mean NaN; StDev NaN;

Variable Format: numeric

Notes: UNF:6:28/Md/V3TtMzPzlj64SjJA==

N

f99988 Location:

Summary Statistics: Min. NaN; Mean NaN; Valid 0.0; StDev NaN; Max. NaN;

Variable Format: numeric

Notes: UNF:6:28/Md/V3TtMzPzlj64SjJA==

O

f99988 Location:

Summary Statistics: Mean NaN; StDev NaN; Valid 0.0; Max. NaN; Min. NaN;

Variable Format: numeric

Notes: UNF:6:28/Md/V3TtMzPzlj64SjJA==

P

f99988 Location:

Summary Statistics: Min. NaN; Max. NaN; Valid 0.0; Mean NaN; StDev NaN

Variable Format: numeric

Notes: UNF:6:28/Md/V3TtMzPzlj64SjJA==

Other Study-Related Materials

Label:

0_Read_me MET2018-P09-CM.pdf

Text:

Documentation describing the files of the NMR dataset to be used with NMRProcFlow and BioStatFlow tools to replay the processing.

Notes:

application/pdf

Other Study-Related Materials

Label:

1_NMR MatMet MET2018-P09-CM v3.pdf

Text:

Detailed Material and Method used in the manuscript Musseau etal. 2020 for Metabolomic analyses by proton NMR profiling.

Notes:

application/pdf

Other Study-Related Materials

Label:

buckets_CDBBI_18P09_CM 26 juillet 2019.txt

Text:

Bucket file to be used with NMRProcFlow tool

Notes:

text/plain

Other Study-Related Materials

Label:

CDBBI_18P09_CM.txt

Text:

File with the name of the samples and factors (fruit growth stages; WT, mutant lines), to be used with NMRProcFlow tool

Notes:

text/plain

Other Study-Related Materials

Label:

CDBBI_18P09_CM.zip

Text:

36 NMR spectra directories in Bruker format

Notes:

application/zip

Other Study-Related Materials

Label:

DATA-AM_WB_CDBBI_18P09_CM 26 juillet 2019 export CSN et SNR 10.csv

Text:

Table of the relative quantification by 1D 1H-NMR of semipolar extract of gpb1-c mutants and wild type tomato fruit pericarp.

Notes:

text/csv

Other Study-Related Materials

Label:

DATA-AM_WB_CDBBI_18P09_CM 26 juillet 2019 export CSN et SNR 10.xls

Text:

Table of the relative quantification by 1D 1H-NMR of semipolar extract of gpb1-c mutants and wild type tomato fruit pericarp.

Notes:

application/vnd.ms-excel

Other Study-Related Materials

Label:

NMR Rosetta stone - Sample name codes.pdf

Text:

Correspondance table of sample names used in NMR dataset and in the publication Musseau et al. 2020

Notes:

application/pdf

Other Study-Related Materials

Label:

NP_macro_cmd_CDBBI_18P09_CM.txt

Text:

MacroCommand file to be used with NMRProcFlow tool for local baseline and realignement processing before bucketing of 1D NMR spectra

Notes:

text/plain