Data supplementing the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” - raw MiSeq data, inventories (ICPSR doi:10.15454/SXKA8I)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Entire Codebook

Document Description

Citation

Title:

Data supplementing the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” - raw MiSeq data, inventories

Identification Number:

doi:10.15454/SXKA8I

Distributor:

Portail Data INRAE

Date of Distribution:

2020-02-24

Version:

2

Bibliographic Citation:

Rivera, Sinziana; Vasselon, Valentin; Mary, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” - raw MiSeq data, inventories", https://doi.org/10.15454/SXKA8I, Portail Data INRAE, V2, UNF:6:qkDWkBPhUOQHwccJmQL5Ng== [fileUNF]

Study Description

Citation

Title:

Data supplementing the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” - raw MiSeq data, inventories

Identification Number:

doi:10.15454/SXKA8I

Authoring Entity:

Rivera, Sinziana (INRAE)

Vasselon, Valentin (OFB)

Mary, Nathalie (Ethyc'O)

Monnier, Olivier (OFB)

Rimet, Frédéric (INRAE)

Bouchez, Agnès (INRAE)

Distributor:

Portail Data INRAE

Access Authority:

Rimet, Frederic

Depositor:

Rimet, Frederic

Date of Deposit:

2020-02-24

Study Scope

Keywords:

Biodiversity and Ecology, Genetic Resource, Insects and Entomology, Microorganisms, Omics, Water resources

Abstract:

These data supplement the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to “Molecular Ecology Resources” journal.------------------ The directory is composed of: “38_samples_fastq:files”: contains raw demultiplexed fastq files (R1. fastq and R2. fastq) for each of the 38 samples used in this study to produce OTUs and taxonomic inventories.----------------------------- “Samples id.xlsx”: contains the samples ID of the fastq files---------------------------- “Inventories.xlsx”: contains single and multi-habitat morphological inventories as well as molecular inventories resulting from the study

Kind of Data:

Dataset

Methodology and Processing

Sources Statement

Data Access

Notes:

<img src="https://www.etalab.gouv.fr/wp-content/uploads/2011/10/licence-ouverte-open-licence.gif" alt="Licence Ouverte" height="100"><a href="https://www.etalab.gouv.fr/licence-ouverte-open-licence">Licence Ouverte / Open Licence Version 2.0</a> compatible CC BY

Other Study Description Materials

File Description--f98337

File: Inventories.tab

  • Number of cases: 97

  • No. of variables per record: 22

  • Type of File: text/tab-separated-values

Notes:

UNF:6:OX3Umjn1Sowi8WqhQ+GpsA==

File Description--f98338

File: samples ID.tab

  • Number of cases: 38

  • No. of variables per record: 8

  • Type of File: text/tab-separated-values

Notes:

UNF:6:WYTf+p/tQq2JOBR/fdbPMQ==

Variable Description

List of Variables:

Variables

Taxon

f98337 Location:

Variable Format: character

Notes: UNF:6:iJeLI/7CLllxXjwGZ0WR3A==

11000001

f98337 Location:

Summary Statistics: Min. 0.0; Valid 97.0; StDev 192.02185843054505; Mean 26.958762886597953; Max. 1826.0;

Variable Format: numeric

Notes: UNF:6:1kj4EHBASr1o2swU0+UQwA==

11000002

f98337 Location:

Summary Statistics: Mean 9.71134020618556; Min. 0.0; StDev 31.156178748794048; Max. 181.0; Valid 97.0

Variable Format: numeric

Notes: UNF:6:IQxoAA8K7L2+kEET83lZ/w==

11000003

f98337 Location:

Summary Statistics: Mean 22.20618556701029; Valid 97.0; Min. 0.0; Max. 538.0; StDev 76.23154669387355;

Variable Format: numeric

Notes: UNF:6:PjaA1CZ2BG9bkvyMXCz8Iw==

11000004

f98337 Location:

Summary Statistics: Min. 0.0; Mean 53.3298969072164; StDev 227.45062292220146; Max. 1502.0; Valid 97.0

Variable Format: numeric

Notes: UNF:6:XKmh4kCyXRF64U3uFo1/OQ==

11000006

f98337 Location:

Summary Statistics: Min. 0.0; StDev 9.535372291749695; Max. 44.0; Mean 3.6288659793814486; Valid 97.0

Variable Format: numeric

Notes: UNF:6:ly8U1FNntlgOho3v24VIyQ==

11000007

f98337 Location:

Summary Statistics: Max. 930.0; Valid 97.0; StDev 127.9801416887271; Mean 30.0; Min. 0.0

Variable Format: numeric

Notes: UNF:6:xsms4h9xF5eGKKGVyOWe0A==

11000008

f98337 Location:

Summary Statistics: Valid 97.0; Max. 894.0; Min. 0.0; Mean 20.061855670103075; StDev 95.35916911351833

Variable Format: numeric

Notes: UNF:6:v2OStVOb15zTXoP6g8yjXA==

11000009

f98337 Location:

Summary Statistics: Max. 3019.0; Min. 0.0; Mean 56.927835051546346; StDev 324.138320764412; Valid 97.0

Variable Format: numeric

Notes: UNF:6:/2SF9Ji2u4mubI8RQtqCAQ==

11000010

f98337 Location:

Summary Statistics: StDev 137.5407773024501; Min. 0.0; Mean 39.15463917525777; Valid 97.0; Max. 860.0

Variable Format: numeric

Notes: UNF:6:R3lz3jm0fn/EGRO1hIWSWA==

11000011

f98337 Location:

Summary Statistics: Valid 97.0; Min. 0.0; Mean 17.257731958762907; Max. 522.0; StDev 77.82810631322339

Variable Format: numeric

Notes: UNF:6:wSowyJNzdxR0vkc2qE16Eg==

11000013

f98337 Location:

Summary Statistics: Max. 352.0; Min. 0.0; Mean 13.07216494845359; StDev 45.25788315832396; Valid 97.0

Variable Format: numeric

Notes: UNF:6:9ww9dMQ8HDXUc4s1nRTSsQ==

11000015

f98337 Location:

Summary Statistics: Max. 2293.0; Valid 97.0; Min. 0.0; Mean 53.0; StDev 304.16103876071963;

Variable Format: numeric

Notes: UNF:6:1zra7fgfWghMSTI1fyLAgw==

11000016

f98337 Location:

Summary Statistics: Max. 1271.0; StDev 131.9278600839222; Mean 24.525773195876262; Min. 0.0; Valid 97.0;

Variable Format: numeric

Notes: UNF:6:1UfXkqcvUYnvdrSHarV3qg==

11000017

f98337 Location:

Summary Statistics: Min. 0.0; StDev 119.38803094527402; Valid 97.0; Mean 28.474226804123738; Max. 1018.0;

Variable Format: numeric

Notes: UNF:6:kVfC1j3+miMp+89DbyJySw==

11000019

f98337 Location:

Summary Statistics: StDev 171.06436498392597; Min. 0.0; Max. 1202.0; Mean 36.93814432989684; Valid 97.0

Variable Format: numeric

Notes: UNF:6:P/S51eOPcq/egNKvjaW6Og==

11000020

f98337 Location:

Summary Statistics: StDev 92.52389864951552; Min. 0.0; Max. 660.0; Valid 97.0; Mean 25.072164948453636;

Variable Format: numeric

Notes: UNF:6:xAXaN4dlFVLz2rok70bZoA==

11000021

f98337 Location:

Summary Statistics: Max. 904.0; StDev 119.06730531878314; Min. 0.0; Mean 29.51546391752581; Valid 97.0;

Variable Format: numeric

Notes: UNF:6:UCd/o4yOkx6bwPDnQ0Ve7A==

11000024

f98337 Location:

Summary Statistics: Mean 123.20618556701027; Min. 0.0; Max. 9500.0; StDev 968.7777408731798; Valid 97.0;

Variable Format: numeric

Notes: UNF:6:NHTJTFtL9kWlXSfXrgUHVg==

11000050

f98337 Location:

Summary Statistics: StDev 581.155393032291; Min. 0.0; Mean 84.30927835051556; Valid 97.0; Max. 4152.0

Variable Format: numeric

Notes: UNF:6:lRdm+wDJwm9uAe7u8wEkWw==

Total

f98337 Location:

Summary Statistics: Mean 697.3505154639163; StDev 2305.5927068816327; Max. 19033.0; Min. 0.0; Valid 97.0

Variable Format: numeric

Notes: UNF:6:rt+fgIzjy++Xf/t/Mmu+bg==

%

f98337 Location:

Summary Statistics: StDev 3.4084719880573484; Mean 1.0309278350515465; Max. 28.137427376077344; Min. 0.0; Valid 97.0;

Variable Format: numeric

Notes: UNF:6:psFKmfahEzPBoovZdVIgAQ==

Idmothur

f98338 Location:

Summary Statistics: Max. 38.0; Valid 38.0; Mean 19.5; StDev 11.113055385446435; Min. 1.0

Variable Format: numeric

Notes: UNF:6:gKgNTwNM8Nzgf8DMeLGw6Q==

SandreID

f98338 Location:

Summary Statistics: StDev 11.025123256295178; Mean 1.100001347368421E7; Max. 1.100005E7; Valid 38.0; Min. 1.1000001E7

Variable Format: numeric

Notes: UNF:6:G9rmIVjUAmpBhNqMsCJA/A==

sampleid

f98338 Location:

Variable Format: character

Notes: UNF:6:cW1sgcdK+hpmf7OX+tgzng==

ReplicatPCR

f98338 Location:

Variable Format: character

Notes: UNF:6:ElOtIfSJHA7Kj+Onf+Xhsw==

Rivername

f98338 Location:

Variable Format: character

Notes: UNF:6:yPxCuhS8XLR6o8kqahgxDQ==

Rivernameabreviation

f98338 Location:

Variable Format: character

Notes: UNF:6:9zSLYK1gI0xWPUzuKUtnzA==

Site

f98338 Location:

Variable Format: character

Notes: UNF:6:nyjfI8h7yDjmra5WdMLW3w==

siteabreviation

f98338 Location:

Variable Format: character

Notes: UNF:6:dZPgcbmdamO7dSqpjoGOLw==