Sunflower xylem sap NMR-based Metabolomics - Low [Cd] exposition (ICPSR doi:10.15454/WEIXCP)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
Entire Codebook

Document Description

Citation

Title:

Sunflower xylem sap NMR-based Metabolomics - Low [Cd] exposition

Identification Number:

doi:10.15454/WEIXCP

Distributor:

Portail Data INRAE

Date of Distribution:

2020-08-03

Version:

2

Bibliographic Citation:

Deborde, Catherine, 2020, "Sunflower xylem sap NMR-based Metabolomics - Low [Cd] exposition", https://doi.org/10.15454/WEIXCP, Portail Data INRAE, V2, UNF:6:SOmZDpj3dVza5NuskRNxzA== [fileUNF]

Study Description

Citation

Title:

Sunflower xylem sap NMR-based Metabolomics - Low [Cd] exposition

Identification Number:

doi:10.15454/WEIXCP

Authoring Entity:

Deborde, Catherine (INRA - Institut National de la Recherche Agronomique)

Other identifications and acknowledgements:

Cornu Jean-Yves

Other identifications and acknowledgements:

Deborde Catherine

Other identifications and acknowledgements:

Moing Annick

Other identifications and acknowledgements:

Maucourt Mickaël

Grant Number:

ANR-11-CESA-0008

Grant Number:

ANR-11-INBS-0010

Distributor:

Portail Data INRAE

Access Authority:

Deborde, Catherine

Depositor:

Deborde, Catherine

Date of Deposit:

2020-07-31

Study Scope

Keywords:

Omics, Plant Breeding and Plant Products, Other

Abstract:

1D 1H-NMR metabolomic profiling of xylem sap in two sunflower cultivars exposed to low Cd concentrations in hydroponics.

Kind of Data:

Dataset

Kind of Data:

Other

Methodology and Processing

Sources Statement

Data Access

Notes:

CC0 Waiver

Other Study Description Materials

Related Publications

Citation

Bibliographic Citation:

Cornu J-Y, Bussière S, Coriou C, Robert T, Maucourt M, Deborde C, Moing A, Nguyen C. (2020) Changes in plant growth, Cd partitioning and xylem sap composition in two sunflower cultivars exposed to low Cd concentrations in hydroponics. Ecotoxicology and Environmental Safety (in Press)

File Description--f100373

File: Rosetta stone - Sample name codes.tab

  • Number of cases: 37

  • No. of variables per record: 5

  • Type of File: text/tab-separated-values

Notes:

UNF:6:PN8Ay4Ca1cmvB/UW5FUl4Q==

File Description--f100579

File: WB_MMBBI_14P15 vf_UK.tab

  • Number of cases: 24

  • No. of variables per record: 10

  • Type of File: text/tab-separated-values

Notes:

UNF:6:5JzpmO4BwwRDScGyq/z3LA==

Variable Description

List of Variables:

Variables

A

f100373 Location:

Summary Statistics: Mean NaN; Min. NaN; Valid 0.0; StDev NaN; Max. NaN

Variable Format: numeric

Notes: UNF:6:JLkg+y9J9SGk/Oj40LyhCQ==

Samplecodesusedin

f100373 Location:

Variable Format: character

Notes: UNF:6:v1l6QDznDWUGXaxoG3pq4g==

C

f100373 Location:

Variable Format: character

Notes: UNF:6:X8Ra3T8dBueVob322Wxeag==

D

f100373 Location:

Summary Statistics: Mean NaN; Max. NaN; Valid 0.0; StDev NaN; Min. NaN

Variable Format: numeric

Notes: UNF:6:JLkg+y9J9SGk/Oj40LyhCQ==

E

f100373 Location:

Summary Statistics: StDev NaN; Valid 0.0; Min. NaN; Max. NaN; Mean NaN

Variable Format: numeric

Notes: UNF:6:JLkg+y9J9SGk/Oj40LyhCQ==

Rawnames

f100579 Location:

Variable Format: character

Notes: UNF:6:vsbJpE4Gly9C1djPOMm54Q==

Samplecode

f100579 Location:

Variable Format: character

Notes: UNF:6:DMNZblRYXRuPuVumMCCKzw==

expno

f100579 Location:

Summary Statistics: StDev 0.0; Min. 1.0; Max. 1.0; Valid 24.0; Mean 1.0

Variable Format: numeric

Notes: UNF:6:hzWUwKsHyyi33xdbxz+NgQ==

procno

f100579 Location:

Summary Statistics: Mean 1.0; StDev 0.0; Min. 1.0; Valid 24.0; Max. 1.0

Variable Format: numeric

Notes: UNF:6:hzWUwKsHyyi33xdbxz+NgQ==

Cultivar

f100579 Location:

Variable Format: character

Notes: UNF:6:Owp4mp1IOGziSoI5EN9rpQ==

Cadmium

f100579 Location:

Variable Format: character

Notes: UNF:6:CGRDzBWQhYH62g0KFSZV8w==

CultivarCd

f100579 Location:

Variable Format: character

Notes: UNF:6:ngwCuy6bxBJdYMh+95veyQ==

Volume(10^-6.L)

f100579 Location:

Summary Statistics: Mean 160.0; Min. 160.0; Valid 24.0; Max. 160.0; StDev 0.0

Variable Format: numeric

Notes: UNF:6:/xxnV4HigB6ycNrKjTV06A==

mgDW

f100579 Location:

Summary Statistics: Max. 1.0; StDev 0.0; Mean 1.0; Valid 24.0; Min. 1.0

Variable Format: numeric

Notes: UNF:6:hzWUwKsHyyi33xdbxz+NgQ==

Dilution

f100579 Location:

Summary Statistics: StDev 0.0; Max. 1.0; Valid 24.0; Min. 1.0; Mean 1.0

Variable Format: numeric

Notes: UNF:6:hzWUwKsHyyi33xdbxz+NgQ==

Other Study-Related Materials

Label:

0_Read_me_MET2014-P15-JYC.pdf

Notes:

application/pdf

Other Study-Related Materials

Label:

1_NMR Materials and Methods MET2014-P15_JYC.pdf

Text:

Detailed Material and Method used in the manuscript Cornu et al. 2020 for Metabolomic analyses by proton NMR profiling of sunflower xylem sap.

Notes:

application/pdf

Other Study-Related Materials

Label:

MMBBI_14P15-1.zip

Text:

24 NMR spectra directories in Bruker format of sunflower xylem sap

Notes:

application/zip

Other Study-Related Materials

Label:

MMBBI_14P15-Extraction blank.zip

Text:

2 NMR spectra directories (containing NMR spectra of extraction blank)

Notes:

application/zip

Other Study-Related Materials

Label:

MMBBI_14P15.txt

Text:

File with the name of the samples and factors (Cultivar; Cadmium concentration), to be used with NMRProcFlow tool

Notes:

text/plain

Other Study-Related Materials

Label:

NMR assignments of sunflower xylem sap.pdf

Text:

<i>1</i>H-NMR Annotated spectra and Table of chemical shifts used for identification and quantification of metabolites in <i>1</i>H-NMR spectra of sunflower xylem extracts.

Notes:

application/pdf

Other Study-Related Materials

Label:

NPF MMBBI_14P15-gammeFructose Glutamate.zip

Text:

NMRProcFlow workBook file (Calibration Samples, Buckets, Data, Calibration factor determination) and NMR Bruker files used for calibration factor determination of fructose

Notes:

application/zip

Other Study-Related Materials

Label:

NPF MMBBI_14P15-gamme Glucose Gln.zip

Text:

NMRProcFlow workBook file (Calibration Samples, Buckets, Data, Calibration factor determination) and NMR Bruker files used for calibration factor determination of glucose

Notes:

application/zip