DROPS maize GWAS analysis dataset

Version 1.1

Nicolas, Stephane; Negro, Sandra; Millet, Emilie; Bauland, Cyril; Madur, Delphine; Combes, Valérie; Welcker, Claude; Tardieu, François; Charcosset, Alain, 2019, "DROPS maize GWAS analysis dataset", https://doi.org/10.15454/6TL2N4, Portail Data INRAE, V1

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Description	This dataset corresponds to the most significant SNP (-log(p-value)>5) identified by genome-wide association studies between the three traits (Flowering Time, Plant Height, Grain Yield) measured in 22 environments on a panel of 247 maize inbred lines. These analysis were conducted in the DROPS DROught-yielding PlantS european project (F. Tardieu Coord.) and ANR-PIA Amaizing (A. Charcosset, Coord.). These results were published in Negro S., et al (2019) in BMC Plant Biology: Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies" . (2018-10-24)
Subject	Plant Breeding and Plant Products
Related Publication	Sandra S. Negro, Emilie J. Millet, Delphine Madur, Cyril Bauland, Valérie Combes, Claude Welcker, François Tardieu, Alain Charcosset, Stéphane D. Nicolas: Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies. 2019 arXiv: https://doi.org/10.1101/476598

	1 File
	GWAS_Result_Drops_Publication_Sandra.tsv text/tab-separated-values - 611.1 KB - Jun 17, 2019 - 25 Downloads MD5: e2b1d8ebeee70c141a73baa3722223fd GWAS results: 4378 loci associated with a -log(p-value)>5 for flowering time (DTA), plant height (PlantHT), and yield (GY15) identified across 22 environments (Env). Three genotyping technologies used for genome-wide association studies were indicated in "Tech" columns (50K, 600K, GBS).	Download Explore View Data TwoRavens Data Explorer

Citation Metadata

Dataset Persistent ID	doi:10.15454/6TL2N4
Publication Date	2019-06-17
Title	DROPS maize GWAS analysis dataset
Contact	Use email button above to contact. Steinbach, Delphine (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) Madur, Delphine (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) Nicolas, Stephane (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon)
Author	Nicolas, Stephane (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) - ORCID: 0000-0003-0758-9930 Negro, Sandra (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) Millet, Emilie (INRA - Institut National de la Recherche Agronomique, LEPSE) - ORCID: 0000-0002-2913-4892 Bauland, Cyril (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) - ORCID: 0000-0001-9916-2744 Madur, Delphine (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) Combes, Valérie (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) Welcker, Claude (INRA - Institut National de la Recherche Agronomique, LEPSE) - ORCID: 0000-0002-8275-1259 Tardieu, François (INRA - Institut National de la Recherche Agronomique, LEPSE) - ORCID: 0000-0002-7287-0094 Charcosset, Alain (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) - ORCID: 0000-0001-6125-503X
Description	This dataset corresponds to the most significant SNP (-log(p-value)>5) identified by genome-wide association studies between the three traits (Flowering Time, Plant Height, Grain Yield) measured in 22 environments on a panel of 247 maize inbred lines. These analysis were conducted in the DROPS DROught-yielding PlantS european project (F. Tardieu Coord.) and ANR-PIA Amaizing (A. Charcosset, Coord.). These results were published in Negro S., et al (2019) in BMC Plant Biology: Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies" . (2018-10-24)
Subject	Plant Breeding and Plant Products
Kind of Data	Dataset
Data Origin	survey data; analysis data
Life cycle step	Data processing: Data integration
Related Publication	Sandra S. Negro, Emilie J. Millet, Delphine Madur, Cyril Bauland, Valérie Combes, Claude Welcker, François Tardieu, Alain Charcosset, Stéphane D. Nicolas: Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies. 2019 arXiv: https://doi.org/10.1101/476598 https://www.biorxiv.org/content/early/2018/11/23/476598
Grant Information	European Commission: FP7-KBBE-2009-1-2-05 ANR PIA: ANR-10-BTBR-01
Project Information	DROPS (Drought-tolerant yielding plants) . ID 244374
Depositor	Steinbach, Delphine
Deposit Date	2018-10-25

Life Sciences Metadata

Design Type	Cohort Study
Organism	Zea mays
Technology Type	DNA microarray; nucleotide sequencing
Sample type	F1 Hybrids

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