DROPS maize GWAS analysis dataset

Version 1.1

Nicolas, Stephane; Negro, Sandra; Millet, Emilie; Bauland, Cyril; Madur, Delphine; Combes, Valérie; Welcker, Claude; Tardieu, François; Charcosset, Alain, 2019, "DROPS maize GWAS analysis dataset", https://doi.org/10.15454/6TL2N4, Portail Data INRAE, V1

Learn about Data Citation Standards.

Dataset Metrics

20 Downloads

Description	This dataset corresponds to the most significant SNP (-log(p-value)>5) identified by genome-wide association studies between the three traits (Flowering Time, Plant Height, Grain Yield) measured in 22 environments on a panel of 247 maize inbred lines. These analysis were conducted in the DROPS DROught-yielding PlantS european project (F. Tardieu Coord.) and ANR-PIA Amaizing (A. Charcosset, Coord.). These results were published in Negro S., et al (2019) in BMC Plant Biology: Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies" . (2018-10-24)
Subject	Plant Breeding and Plant Products
Related Publication	Sandra S. Negro, Emilie J. Millet, Delphine Madur, Cyril Bauland, Valérie Combes, Claude Welcker, François Tardieu, Alain Charcosset, Stéphane D. Nicolas: Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies. 2019 arXiv: https://doi.org/10.1101/476598

	1 File
	GWAS_Result_Drops_Publication_Sandra.tsv text/tab-separated-values - 611.1 KB - Jun 17, 2019 - 20 Downloads MD5: e2b1d8ebeee70c141a73baa3722223fd GWAS results: 4378 loci associated with a -log(p-value)>5 for flowering time (DTA), plant height (PlantHT), and yield (GY15) identified across 22 environments (Env). Three genotyping technologies used for genome-wide association studies were indicated in "Tech" columns (50K, 600K, GBS).	View Data TwoRavens Data Explorer Download

Citation Metadata

Dataset Persistent ID	doi:10.15454/6TL2N4
Publication Date	2019-06-17
Title	DROPS maize GWAS analysis dataset
Author	Nicolas, Stephane (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) - ORCID: 0000-0003-0758-9930 Negro, Sandra (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) Millet, Emilie (INRA - Institut National de la Recherche Agronomique, LEPSE) - ORCID: 0000-0002-2913-4892 Bauland, Cyril (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) - ORCID: 0000-0001-9916-2744 Madur, Delphine (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) Combes, Valérie (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) Welcker, Claude (INRA - Institut National de la Recherche Agronomique, LEPSE) - ORCID: 0000-0002-8275-1259 Tardieu, François (INRA - Institut National de la Recherche Agronomique, LEPSE) - ORCID: 0000-0002-7287-0094 Charcosset, Alain (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) - ORCID: 0000-0001-6125-503X
Contact	Use email button above to contact. Steinbach, Delphine (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) Madur, Delphine (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon) Nicolas, Stephane (INRA - Institut National de la Recherche Agronomique, GQE-Le Moulon)
Description	This dataset corresponds to the most significant SNP (-log(p-value)>5) identified by genome-wide association studies between the three traits (Flowering Time, Plant Height, Grain Yield) measured in 22 environments on a panel of 247 maize inbred lines. These analysis were conducted in the DROPS DROught-yielding PlantS european project (F. Tardieu Coord.) and ANR-PIA Amaizing (A. Charcosset, Coord.). These results were published in Negro S., et al (2019) in BMC Plant Biology: Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies" . (2018-10-24)
Kind of Data	Dataset
Data Origin	survey data; analysis data
Subject	Plant Breeding and Plant Products
Life cycle step	Data processing: Data integration
Related Publication	Sandra S. Negro, Emilie J. Millet, Delphine Madur, Cyril Bauland, Valérie Combes, Claude Welcker, François Tardieu, Alain Charcosset, Stéphane D. Nicolas: Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies. 2019 arXiv: https://doi.org/10.1101/476598 https://www.biorxiv.org/content/early/2018/11/23/476598
Grant Information	European Commission: FP7-KBBE-2009-1-2-05 ANR PIA: ANR-10-BTBR-01
Project Information	DROPS (Drought-tolerant yielding plants) . ID 244374
Depositor	Steinbach, Delphine
Deposit Date	2018-10-25

Life Sciences Metadata

Design Type	Cohort Study
Organism	Zea mays
Technology Type	DNA microarray; nucleotide sequencing
Sample type	F1 Hybrids

Waiver

Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation above, generated by the Dataverse.

No waiver has been selected for this dataset.

Restricted Files + Terms of Access

Restricted Files

There are 0 restricted files in this dataset.

Terms of Access

Ce(tte) œuvre est mise à disposition selon les termes de la Licence Creative Commons Attribution 2.0 France.

Guestbook

The following guestbook will prompt a user to provide additional information when downloading a file.

INRAE

Preview Guestbook

Upon downloading files the guestbook asks for the following information.

Guestbook Name

Collected Data

Account Information

Dataset	Summary	Contributors	Published
No records found.

Share Dataset

Share this dataset on your favorite social media networks.

Dataset Citations

Citations for this dataset are retrieved from Crossref via DataCite using Make Data Count standards. For more information about dataset metrics, please refer to the User Guide.

Sorry, no citations were found.

Restricted Files Selected

The restricted file(s) selected may not be downloaded because you have not been granted access.

Restricted Files Selected

The restricted file(s) selected may not be downloaded because you have not been granted access.

Click Continue to download the files you have access to download.

Delete Dataset

Are you sure you want to delete this dataset and all of its files? You cannot undelete this dataset.

Delete Draft Version

Are you sure you want to delete this draft version? Files will be reverted to the most recently published version. You cannot undelete this draft.

Unpublished Dataset Private URL

Private URL can only be used with unpublished versions of datasets.

Unpublished Dataset Private URL

Are you sure you want to disable the Private URL? If you have shared the Private URL with others they will no longer be able to use it to access your unpublished dataset.

Delete Files

The file(s) will be deleted after you click on the Delete button.

Files will not be removed from previously published versions of the dataset.

Compute

This dataset contains restricted files you may not compute on because you have not been granted access.

Deaccession Dataset

Are you sure you want to deaccession? The selected version(s) will no longer be viewable by the public.

Deaccession Dataset

Are you sure you want to deaccession this dataset? It will no longer be viewable by the public.

Version Differences Details

Please select two versions to view the differences.

Version Differences Details

Version:
Last Updated:

Select File(s)

Please select a file or files to be downloaded.

Select File(s)

Please select a file or files for access request.

Select File(s)

Please select a file or files to be deleted.

Select File(s)

Please select unrestricted file(s) to be restricted.

Select File(s)

Please select restricted file(s) to be unrestricted.

Select File(s)

Please select a file or files to be edited.

Select File(s)

Please select a file or files to be edited.

Edit Tags

Select existing file tags or create new tags to describe your files. Each file can have more than one tag.

Request Access

You need to Sign Up or Log In to request access to this file.

Dataset Terms

Please confirm and/or complete the information needed below in order to continue.

Terms of Access

Ce(tte) œuvre est mise à disposition selon les termes de la Licence Creative Commons Attribution 2.0 France.

Name

Institution

Position

Package File Download

Use the Download URL in a Wget command or a download manager to download this package file. Download via web browser is not recommended. User Guide - Downloading a Dataverse Package via URL

- -

Download URL

https://data.inrae.fr/api/access/datafile/

Request Access

Please confirm and/or complete the information needed below in order to request access to files in this dataset.

Terms of Access

Ce(tte) œuvre est mise à disposition selon les termes de la Licence Creative Commons Attribution 2.0 France.

Compute Batch

Clear Batch

Dataset	Dataset Persistent ID

Compute Batch

File Restrictions

Terms of Access

Request Access

Enable access request

Submit for Review

You will not be able to make changes to this dataset while it is in review.

Publish Dataset

Are you sure you want to publish this dataset? Once you do so it must remain published.

Publish Dataset

This dataset cannot be published until ThaliaDB maize Dataverse is published. Would you like to publish both right now?

Once you publish this dataset it must remain published.

Publish Dataset

Are you sure you want to republish this dataset?

Select if this is a minor or major version update.

Minor Release (1.2)

Major Release (2.0)

Publish Dataset

This dataset cannot be published until ThaliaDB maize Dataverse is published by its administrator.

Publish Dataset

This dataset cannot be published until ThaliaDB maize Dataverse and SelGen are published.

Return to Author

Return this dataset to contributor for modification.