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Transposable element annotation of Arabidopsis lyrata subsp. lyrata
Version 1.0
Quesneville, Hadi, 2018, "Transposable element annotation of Arabidopsis lyrata subsp. lyrata", https://doi.org/10.15454/INYUVZ, Portail Data INRAE, V1
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Description
After running the TEdenovo, we got a filtered library (without the SSR consensus and without the unclassified consensus if they were generated with less than 10 HSPs). We have clustered this library and the cluster number is in the header of each consensus. After a first TEannot on this library, we filtered the consensus having at least one FLC (Full Length Copy). This library is inserted in RepetDB. We have launched a second TEannot on this library, and we have inserted the statistical data of this second annotation. Be careful, this TE library have not been manually curated. It is provided “as is”, i.e. a direct output of the REPET pipeline. Genome annotation files and TE consensus ID mapping between previous and new classification are available for download. (2017-08-25)
Subject Medicine, Health and Life Sciences; Agricultural Sciences
Keyword transposable_element (SO:0000101), Molecular Sequence Annotation
Link to data http://urgi.versailles.inra.fr/repetdb/begin.do#search?taxonGroup=81972
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