Oak Genome Sequencing Website

Version 2.1

INRAE, 2020, "Oak Genome Sequencing Website", https://doi.org/10.15454/WSMRIN, Portail Data INRAE, V2

Dataset Metrics

0 Downloads

Description	The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource by INRAE, available at http://www.oakgenome.fr/. It provides access to various resources : oak genome by the numbers, data, links, publications, partners, funding and outreach. It was conducted by a French consortium led by Christophe Plomion at INRAE Bordeaux. The oak haploid genome assembly and corresponding annotation have been deposited in the European Nucleotide Archive under project accession code PRJEB19898. (2020-04-09)
Subject	Forests and Forest Products; Omics; Plant Health and Pathology; Biodiversity and Ecology; Genetic Resource
Keyword	Oak, genes, adaptation, sequencing, genomics, Plant evolution, Forestry
Related Publication	Plomion, C., Aury, J., Amselem, J. et al. Oak genome reveals facets of long lifespan. Nature Plants 4, 440–452 (2018). https://doi.org/10.1038/s41477-018-0172-3 doi: 10.1038/s41477-018-0172-3
Link to data	http://www.oakgenome.fr


There are no files in this dataset.

Citation Metadata

Dataset Persistent ID	doi:10.15454/WSMRIN
Publication Date	2020-04-10
Title	Oak Genome Sequencing Website
Link to data	http://www.oakgenome.fr
Contact	Use email button above to contact. Ehrenmann, Francois (INRA - Institut National de la Recherche Agronomique) Plomion, Christophe (INRA - Institut National de la Recherche Agronomique)
Author	INRAE (INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement)
Contributor	Data Manager : Ehrenmann, Francois (INRAE) - ORCID: 0000-0003-2727-0070 Project Leader : Plomion, Christophe (INRAE) - ORCID: 0000-0002-3176-2767 Project Manager : Aury, Jean-Marc (CEA, Genoscope - Centre National de Séquençage, Université Paris-Saclay) - ORCID: 0000-0003-1718-3010 Project Manager : Salse, Jérôme (INRAE) - ORCID: 0000-0003-2942-1098 Project Manager : Duplessis, Sébastien (INRAE) - ORCID: 0000-0002-2072-2989 Project Member : Faivre-Rampant, Patricia (INRAE) Research Group : URGI (INRAE)
Description	The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource by INRAE, available at http://www.oakgenome.fr/. It provides access to various resources : oak genome by the numbers, data, links, publications, partners, funding and outreach. It was conducted by a French consortium led by Christophe Plomion at INRAE Bordeaux. The oak haploid genome assembly and corresponding annotation have been deposited in the European Nucleotide Archive under project accession code PRJEB19898. (2020-04-09)
Subject	Forests and Forest Products; Omics; Plant Health and Pathology; Biodiversity and Ecology; Genetic Resource
Keyword	Oak genes adaptation sequencing genomics Plant evolution Forestry
Kind of Data	Dataset; Image; Interactive Resource; Service; Software
Data Origin	Other
Related Publication	Plomion, C., Aury, J., Amselem, J. et al. Oak genome reveals facets of long lifespan. Nature Plants 4, 440–452 (2018). https://doi.org/10.1038/s41477-018-0172-3 doi: 10.1038/s41477-018-0172-3 https://doi.org/10.1038/s41477-018-0172-3
Grant Information	ANR: ANR-11-BSV6-0009 INRA CEA
Project Information	GENOAK (Sequencing of the oak genome and identification of genes that matter for forest tree adaptation)
Time Period Covered	Start: 2011-09-01 ; End: 2015-09-01
Date of Collection	Start: 2011-09-01
Depositor	Ehrenmann, Francois
Deposit Date	2020-04-10

Waiver

Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation above, generated by the Dataverse.

No waiver has been selected for this dataset.

Licence Ouverte / Open Licence Version 2.0 compatible CC BY

Guestbook

No guestbook is assigned to this dataset, you will not be prompted to provide any information on file download.

	Dataset	Summary	Contributors	Published
No records found.

Share Dataset

Share this dataset on your favorite social media networks.

Dataset Citations

Citations for this dataset are retrieved from Crossref via DataCite using Make Data Count standards. For more information about dataset metrics, please refer to the User Guide.

Sorry, no citations were found.

Restricted Files Selected

The restricted file(s) selected may not be downloaded because you have not been granted access.

Restricted Files Selected

The restricted file(s) selected may not be downloaded because you have not been granted access.

Click Continue to download the files you have access to download.

Restricted Files Selected

The restricted file(s) selected may not be downloaded because you have not been granted access.

Click Continue to download the files you have access to download.

Delete Dataset

Are you sure you want to delete this dataset and all of its files? You cannot undelete this dataset.

Delete Draft Version

Are you sure you want to delete this draft version? Files will be reverted to the most recently published version. You cannot undelete this draft.

Unpublished Dataset Private URL

Private URL can only be used with unpublished versions of datasets.

Unpublished Dataset Private URL

Are you sure you want to disable the Private URL? If you have shared the Private URL with others they will no longer be able to use it to access your unpublished dataset.

Delete Files

The file(s) will be deleted after you click on the Delete button.

Files will not be removed from previously published versions of the dataset.

Compute

This dataset contains restricted files you may not compute on because you have not been granted access.

Deaccession Dataset

Are you sure you want to deaccession? The selected version(s) will no longer be viewable by the public.

Deaccession Dataset

Are you sure you want to deaccession this dataset? It will no longer be viewable by the public.

Version Differences Details

Please select two versions to view the differences.

Version Differences Details

Version:
Last Updated:

Select File(s)

Please select a file or files to be downloaded.

Select File(s)

Please select a file or files for access request.

Select File(s)

Please select a file or files to be deleted.

Select File(s)

Please select unrestricted file(s) to be restricted.

Select File(s)

Please select restricted file(s) to be unrestricted.

Select File(s)

Please select a file or files to be edited.

Select File(s)

Please select a file or files to be edited.

Edit Tags

Select existing file tags or create new tags to describe your files. Each file can have more than one tag.

Request Access

You need to Sign Up or Log In to request access to this file.

Data Not Published

In order to map your data with WorldMap, your data must be published. Please publish this dataset, then retry the Map Data feature.

Dataset Terms

Please confirm and/or complete the information needed below in order to continue.

Licence Ouverte / Open Licence Version 2.0 compatible CC BY

Preview Guestbook

Upon downloading files the guestbook asks for the following information.

Guestbook Name

Collected Data

Account Information

Package File Download

Use the Download URL in a Wget command or a download manager to download this package file. Download via web browser is not recommended. User Guide - Downloading a Dataverse Package via URL

- -

Download URL

https://data.inrae.fr/api/access/datafile/

Request Access

Please confirm and/or complete the information needed below in order to request access to files in this dataset.

Licence Ouverte / Open Licence Version 2.0 compatible CC BY

Compute Batch

Clear Batch

Dataset	Dataset Persistent ID

Compute Batch

File Restrictions

Terms of Access

Request Access

Enable access request

Submit for Review

You will not be able to make changes to this dataset while it is in review.

Publish Dataset

Are you sure you want to republish this dataset?

Select if this is a minor or major version update.

Minor Release (2.2)

Major Release (3.0)

Publish Dataset

This dataset cannot be published until Portail Data INRAE is published by its administrator.

Publish Dataset

This dataset cannot be published until Portail Data INRAE and are published.

Return to Author

Return this dataset to contributor for modification.