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Biogeco Dataverse (INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement - www.inrae.fr)
BIOGECO ( BIOdiversité, GEnes & COmmunautés) est une Unité Mixte de Recherche (UMR) de l’INRAE et de l’université de Bordeaux. L’unité comprend des spécialistes de l’écologie, de la génétique des populations, quantitative et évolutive. Les activités de recherche menées par BIOGECO visent à élucider les mécanismes qui façonnent la diversité biologique dans les écosystèmes terrestres à différents niveaux hiérarchiques : communautés, espèces, populations, gènes. Les interactions entre les espèces, les populations et les individus sont donc considérés comme les principaux moteurs de la diversité.

BIOGECO ( BIOdiversity, GEnes & COmmunities) is a Joint Research Unit (UMR) of INRAE and the University of Bordeaux. The unit includes specialists in ecology, population genetics, quantitative and evolutionary. The research activities conducted by BIOGECO to elucidate the mechanisms that shape biological diversity in terrestrial ecosystems at different hierarchical levels: communities, species, populations, genes. Interactions between species, populations and individuals are taken into account as the main drivers of diversity.
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1 to 10 of 23 Results
Jan 15, 2021 - Portail Data INRAE
Castagneyrol, Bastien; van Halder, Inge; Kadiri, Yasmine; Schillé, Laura; Jactel, Hervé, 2020, "Raw data for the paper "Host-mediated, cross-generational intraspecific competition in a herbivore species"", https://doi.org/10.15454/KMUX39, Portail Data INRAE, V3, UNF:6:t1nSuO9c2LkYU+KuXXPn/Q== [fileUNF]
The file contains raw data used in the paper "Host-mediated, cross-generational intraspecific competition in a herbivore species". `x` and `y` are the position of each box tree in the green house; `Treatment` is the prior herbivory treatment; `Clutch.number` is the total number o...
Jan 13, 2021 - Metabarcoding
Frigerio, Jean-Marc; Caron, Henri; Sabatier, Daniel; Molino, Jean-François; Franc, Alain, 2021, "Guiana Trees", https://doi.org/10.15454/XSJ079, Portail Data INRAE, V1
Contains information which has been built for comparing molecular diversity and botanical classification of about 1500 trees in French Guiana. Contains - a fasta file of sequences - a character file with taxonomy per sequence - a distance file of pairwise SW distances between seq...
Metabarcoding(INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement - www.inrae.fr)
Jan 13, 2021
Dec 9, 2020
Alexandre, Hermine; Truffaut, Laura; Klein, Etienne; Ducousso, Alexis; Chancerel, Emilie; Lesur, Isabelle; Dencausse, Benjamin; Louvet, Jean-Marc; Nepveu, Gérard; Torres-Ruiz, José M.; Lagane, Frédéric; Musch, Brigitte; Delzon, Sylvain; Kremer, Antoine, 2020, "Long term monitoring of evolutionary changes in oak stands", https://doi.org/10.15454/XL23BS, Portail Data INRAE, V1, UNF:6:9upGid54ouhcG7oBqApC8Q== [fileUNF]
This dataset is composed of 4 files : The file EcologyG1&G2 provides ecological data assessed on the level of each tree (G1 and G2) and derived from a floristic survey. Details about the assessments of the ecological data are provided in Truffaut et al (2017, Article p. 127 and S...
Oct 14, 2020
Danjon, Frédéric; Saint Cast, Clément; Meredieu, Céline; Bert, Didier; Danquechin Dorval, Antoine; Issenhuth, Bernard; Lagane, Frédéric; Ségura, Raphaël, 2020, "Descriptive variables of 11,004 roots from 69 Pinus pinaster root systems excavated and digitized in 3D", https://doi.org/10.15454/K9DQPA, Portail Data INRAE, V1, UNF:6:FL0LCMy3RvT1EXOu6emvZg== [fileUNF]
This data set include 11004 roots from 69 coarse root systems of Pinus pinaster trees. These trees belong from the same local provenance of P. pinaster trees germinated in the field and grown in the same area (forest range of the “Landes de Gascogne” in Southwest France).These tr...
Sep 21, 2020
Bert, Didier; Le Provost, Grégoire; Delzon, Sylvain; Plomion, Christophe; Gion, Jean-Marc, 2020, "Needle and stem histogical data for Pinus pinaster plasticity study", https://doi.org/10.15454/N8GLMY, Portail Data INRAE, V1
This dataset contains the data that correspond to the article "Needle anatomic plasticity is related to better water-use efficiency and resistance to embolism in fast-growing Pinus pinaster families in conditions of water scarcity". The dataset is composed of two files: Variables...
Aug 5, 2020 - Portail Data INRAE
Ehrenmann, Francois; Plomion, Christophe, 2020, "Oak Genome Sequencing Website", https://doi.org/10.15454/WSMRIN, Portail Data INRAE, V2
The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource by INRAE, available at http://www.oakgenome.fr/. It provides access to various resources : oak genome b...
Jul 13, 2020 - Portail Data INRAE
Lesur Kupin, Isabelle, 2020, "EPITREE project - WGS SNPs Oak", https://doi.org/10.15454/W4XFPF, Portail Data INRAE, V1
In the EPITREE project (https://www6.inrae.fr/epitree-project/Le-projet-EPITREE) we aim at studying the distribution of methylation sites in 10 oak (Q. petraea) genomes. To do so, we had to discriminate between true C/T SNPs and C>T substitutions caused by bisulfite conversion wh...
Jun 30, 2020 - Portail Data INRAE
Bouffartigue, Cathy; Sandrine Debille; Ana Maria Ramos Cabrer; Olivier Fabreguettes; Santiago Pereira-Lorenzo; Timothée Flutre; Luc Harvengt, 2020, "Two main genetic clusters with high admixture between forest and cultivated chestnut (Castanea sativa Mill.) in France", https://doi.org/10.15454/E2DFNJ, Portail Data INRAE, V1, UNF:6:0lpmASDvoFi+pHtRkZQiEw== [fileUNF]
To ensure methodological reproducibility the datasets used in "Two main genetic clusters with high admixture between forest and cultivated chestnut (Castanea sativa Mill.) in France", Rmd and bash files used to perform all analyses used in the article, are stored here. Please sta...
Jun 25, 2020 - Portail Data INRAE
Poeydebat, Charlotte; Jactel, Hervé; Moreira, Xoaquín; Koricheva, Julia; Barsoum, Nadia; Bauhus, Jürgen; Eisenhauer, Nico; Ferlian, Olga; Francisco, Marta; Gottschall, Felix; Gravel, Dominique; Mason, Bill; Muiruri, Evalyne W.; Muys, Bart; Nock, Charles; Paquette, Alain; Ponette, Quentin; Scherer-Lorenzen, Michael; Stokes, Victoria; Staab, Michael; Verheyen, Kris; Castagneyrol, Bastien, 2020, "Raw data for the paper - "Climate affects neighbour-induced changes in leaf chemical defences and tree diversity-herbivory relationships"", https://doi.org/10.15454/SHCUXW, Portail Data INRAE, V1
Raw data for the paper "Climate affects neighbour-induced changes in leaf chemical defences and tree diversity-herbivory relationships" by Charlotte Poeydebat and colleagues. The data file consists of a single excel document with two sheets: the 'glossary' sheet details the chara...
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