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Gene expression in agricultural pests (INRA - Institut National de la Recherche Agronomique)
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1 to 10 of 12 Results
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Pere, Arthur, 2021, "Enriched gene ontology terms in upregulated genes at the transition from J2 to J3-J4 larval stages", https://doi.org/10.15454/VE2MLH, Portail Data INRAE, V1
Analysis of differentially represented (over and under) Gene Ontology (GO) terms in the genes showing significant up-regulation at the transition between the the pre-parasitic J2 and J3-J4 stage. GO over and under representation of terms are according to the hypergeometric test a...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Péré, Arthur; Eves-van den Akker, Sebastian; Bournaud, Caroline, 2021, "Enriched GO terms in predicted dorsal gland effectors", https://doi.org/10.15454/2O77EF, Portail Data INRAE, V1, UNF:6:V3kqvCFEYcsZ8EHNP3r6Ow== [fileUNF]
By cross referencing the list of M. incognita proteins having a predicted signal peptide for secretion and no predicted transmembrane region with the list of proteins encoded by genes with Mel-DOG motifs in their upstream regions, we could predict 457 candidate dorsal gland (DG)...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Pere, Arthur, 2021, "Enriched GO terms in the eight clusters of differentially expressed genes", https://doi.org/10.15454/V3SCRC, Portail Data INRAE, V1, UNF:6:zAVi7N8nqLznWAQu0l7wPg== [fileUNF]
Enriched gene ontology terms in each of the eight clusters of differentially-expressed M. incognita genes. For each cluster (A-H), enriched GO terms, as compared to the whole set of differentially expressed genes, were identified using a hypergeometric test as implemented in the...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Bailly-Bechet, Marc; Dazeniere, Julie, 2021, "Expression clusters of differentially-expressed M. incognita genes", https://doi.org/10.15454/2XJCJQ, Portail Data INRAE, V1, UNF:6:rdh3jgp0aX/AcUw+rrlnwg== [fileUNF]
Distribution of the 12,461 differentially expressed M. incognita genes on 8 expression clusters (named A to H). Files named ClusterA-H.txt list the genes present in each expression clusters. The file named Clusters.xlsx summarizes the distribution of all these genes across the 8...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Grynberg, Priscila, 2021, "Mapping of known effector genes on five Meloidogyne genomes", https://doi.org/10.15454/P5YIGX, Portail Data INRAE, V1
Based on the literature, we established a manually curated list of M. incognita genes specifically expressed in sub-ventral or dorsal secretory gland cells. We started from the list published in (Truong, Nguyen, Abad, Quentin, & Favery, 2015) and manually checked the figures asso...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Pere, Arthur, 2021, "Enriched gene ontology terms in upregulated genes at the transition from adult females to eggs", https://doi.org/10.15454/6EYGIX, Portail Data INRAE, V1
Analysis of differentially represented (over and under) Gene Ontology (GO) terms in the genes showing significant up-regulation at the transition between the eggs and the pre-parasitic J2 stage. GO over and under representation of terms are according to the hypergeometric test as...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Pere, Arthur, 2021, "Enriched gene ontology terms in upregulated genes at the transition from J3-J4 larvae to adult females", https://doi.org/10.15454/5UJNHS, Portail Data INRAE, V1
Analysis of differentially represented (over and under) Gene Ontology (GO) terms in the genes showing significant up-regulation at the transition between the J3-J4 mixed stages and the adult female stage. GO over and under representation of terms are according to the hypergeometr...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Pere, Arthur, 2021, "Enriched gene ontology terms in upregulated genes at the transition from eggs to J2", https://doi.org/10.15454/NOT2LH, Portail Data INRAE, V1
Analysis of differentially represented (over and under) Gene Ontology (GO) terms in the genes showing significant up-regulation at the transition between the eggs and the pre-parasitic J2 stage. GO over and under representation of terms are according to the hypergeometric test as...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Da Rocha, Martine; Eves-van den Akker, Sebastian; Bournaud, Caroline, 2021, "Genes differentially expressed across four life stages in M. incognita and GO enrichments", https://doi.org/10.15454/VLN8UC, Portail Data INRAE, V1, UNF:6:+u0fQZJ31YfvnCdRJnanQg== [fileUNF]
Meloidogyne incognita protein-coding genes differentially expressed at four stages during the parasitic life cycle: - eggs - pre-parasitic second stage juvenile (J2) - mix of parasitic second, third and fourth stage juveniles (J3) - adult females The genes show significantly diff...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne, 2021, "Ancestral reconstruction of the origin of M. incognita effectors in the Meloidogyne genus", https://doi.org/10.15454/OJMRDD, Portail Data INRAE, V1, UNF:6:K4noZaEQBBmM7ZCn8ESQNQ== [fileUNF]
Based on the mapping of non-redundant known M. incognita subventral (SvG) and dorsal (DG) gland effectors on the genomes of five Meloidogyne species ancestral numbers were deduced across their phylogeny using parsimony inference with Mesquite (Maddison & Maddison, 2014). In the g...
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