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Metabarcoding (INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement - www.inrae.fr)
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Jan 13, 2021
Frigerio, Jean-Marc; Caron, Henri; Sabatier, Daniel; Molino, Jean-François; Franc, Alain, 2021, "Guiana Trees", https://doi.org/10.15454/XSJ079, Portail Data INRAE, V1
Contains information which has been built for comparing molecular diversity and botanical classification of about 1500 trees in French Guiana. Contains - a fasta file of sequences - a character file with taxonomy per sequence - a distance file of pairwise SW distances between seq...
Jan 13, 2021 - Guiana Trees
application/octet-stream - 582.5 KB - MD5: 5ea00ac0b637fe50b1d7cd98f22934bb
Fasta file of all trnH-psbA sequences of the data set with NCBI accession as identifier
Jan 13, 2021 - Guiana Trees
application/octet-stream - 85.7 KB - MD5: 4b7fd4451307b2862a9312c05c63b222
Text file with taxonomy (Order, Family, Genus, Species) for each specimen
Jan 13, 2021 - Guiana Trees
application/octet-stream - 13.9 MB - MD5: 1661b6da063f06cc9b538c474f3e45da
Pairwise dissimilarity (from Smith-Waterman local alignment score) between sequences of all specimens.
Jan 13, 2021 - Guiana Trees
application/octet-stream - 18.3 MB - MD5: de2b7eb28af9f82d2f5090d4b594858e
Pairwise kmer distances (k=4) between sequences of all specimens.
Metabarcoding(INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement - www.inrae.fr)
Jan 13, 2021Biogeco Dataverse
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