Metabolome of tomato fruit pericarp of gbp1-c CRISPR mutant

Metabolomic analyses of the tomato pericarp of gbp1-c CRISPR mutants during fruit growth. The mutants have disruption of the SlGBP1 gene encoding a guanylate-binding protein. Metabolomic analyses of the tomato fruit pericarp were performed on semi-polar extracts using proton-NMR and LC-MS.

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1 to 10 of 23 Results

buckets_CDBBI_18P09_CM 26 juillet 2019.txt Jun 30, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type text/plain - 48.8 KB - MD5: a7f7c5d7b7a43e942e1abd13c19869af CodeDonnées Bucket file to be used with NMRProcFlow tool
CDBBI_18P09_CM.txt Jun 30, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type text/plain - 1.6 KB - MD5: 09c3b4826a8fabd875cbb07caaf18dc3 Données File with the name of the samples and factors (fruit growth stages; WT, mutant lines), to be used with NMRProcFlow tool
CDBBI_18P09_CM.zip Jun 30, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type application/zip - 112.3 MB - MD5: fc93128c7bdf778206a38e54c46d16df Données 36 NMR spectra directories in Bruker format
DATA-AM_WB_CDBBI_18P09_CM 26 juillet 2019 export CSN et SNR 10.xls Jun 30, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type application/vnd.ms-excel - 203.0 KB - MD5: a51a163df10ad85d4941f28ea23abacd Données Table of the relative quantification by 1D 1H-NMR of semipolar extract of gpb1-c mutants and wild type tomato fruit pericarp.
NP_macro_cmd_CDBBI_18P09_CM.txt Jun 30, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type text/plain - 3.9 KB - MD5: c9e65898bcdf9b039c1ec410d1a8fa1f Code MacroCommand file to be used with NMRProcFlow tool for local baseline and realignement processing before bucketing of 1D NMR spectra
Summary of NMR annotation of semi-polar extracts of tomato fruit pericarp.tab Jun 30, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type text/tab-separated-values - 3.6 KB - MD5: e1847990a40ff3c8b229dae29dfd02bc Données List of metabolites detected in the 1H-NMR spectra (500 MHz) of semi-polar extracts of tomato fruit pericarp.
Negative mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type Jul 2, 2020 Bernillon, Stéphane, 2020, "Negative mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type", https://doi.org/10.15454/YVKQRW, Portail Data INRAE, V1 Negative mode LC-MS metabolomic profiling of 15 DPA, 20 DPA, 25 DPA and Red Ripe fruit pericarp from the WT, gbp1-c4 and gbp1-c8 independent mutant lines of tomato.
MET-2018-P13-CM_DWnorm_MSDIAL_output_Normalized_2_20194168351.csv Jul 2, 2020 - Negative mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type text/csv - 2.9 MB - MD5: de4b56a515befcdc6781fd1e7309e0e4 Data output from MSDIAL software with an additionnal dry-weight normalization
MET-2018-P13-CM_LCMS_ annotation_table.xlsx Jul 2, 2020 - Negative mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type application/vnd.openxmlformats-officedocument.spreadsheetml.sheet - 27.5 KB - MD5: 66c20ffd44b7eb0de8f6647e5ed72450 List of annotated variables
MET-2018-P13-CM_LCMS_neg_ abf_data.7z Jul 2, 2020 - Negative mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type application/x-7z-compressed - 251.1 MB - MD5: 25a9f5a5ed866ba4e42df9a6240ca5ac 48 negative mode LC-MS acquisitions of samples, QC and blank extractions

buckets_CDBBI_18P09_CM 26 juillet 2019.txt

Jun 30, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

text/plain - 48.8 KB - MD5: a7f7c5d7b7a43e942e1abd13c19869af

CodeDonnées

Bucket file to be used with NMRProcFlow tool

CDBBI_18P09_CM.txt

Jun 30, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

text/plain - 1.6 KB - MD5: 09c3b4826a8fabd875cbb07caaf18dc3

Données

File with the name of the samples and factors (fruit growth stages; WT, mutant lines), to be used with NMRProcFlow tool

CDBBI_18P09_CM.zip

Jun 30, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

application/zip - 112.3 MB - MD5: fc93128c7bdf778206a38e54c46d16df

Données

36 NMR spectra directories in Bruker format

DATA-AM_WB_CDBBI_18P09_CM 26 juillet 2019 export CSN et SNR 10.xls

Jun 30, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

application/vnd.ms-excel - 203.0 KB - MD5: a51a163df10ad85d4941f28ea23abacd

Données

Table of the relative quantification by 1D 1H-NMR of semipolar extract of gpb1-c mutants and wild type tomato fruit pericarp.

NP_macro_cmd_CDBBI_18P09_CM.txt

Jun 30, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

text/plain - 3.9 KB - MD5: c9e65898bcdf9b039c1ec410d1a8fa1f

Code

MacroCommand file to be used with NMRProcFlow tool for local baseline and realignement processing before bucketing of 1D NMR spectra

Summary of NMR annotation of semi-polar extracts of tomato fruit pericarp.tab

Jun 30, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

text/tab-separated-values - 3.6 KB - MD5: e1847990a40ff3c8b229dae29dfd02bc

Données

List of metabolites detected in the 1H-NMR spectra (500 MHz) of semi-polar extracts of tomato fruit pericarp.

Negative mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

Jul 2, 2020

Bernillon, Stéphane, 2020, "Negative mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type", https://doi.org/10.15454/YVKQRW, Portail Data INRAE, V1

Negative mode LC-MS metabolomic profiling of 15 DPA, 20 DPA, 25 DPA and Red Ripe fruit pericarp from the WT, gbp1-c4 and gbp1-c8 independent mutant lines of tomato.

MET-2018-P13-CM_DWnorm_MSDIAL_output_Normalized_2_20194168351.csv

Jul 2, 2020 - Negative mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

text/csv - 2.9 MB - MD5: de4b56a515befcdc6781fd1e7309e0e4

Data output from MSDIAL software with an additionnal dry-weight normalization

MET-2018-P13-CM_LCMS_ annotation_table.xlsx

Jul 2, 2020 - Negative mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

application/vnd.openxmlformats-officedocument.spreadsheetml.sheet - 27.5 KB - MD5: 66c20ffd44b7eb0de8f6647e5ed72450

List of annotated variables

MET-2018-P13-CM_LCMS_neg_ abf_data.7z

Jul 2, 2020 - Negative mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

application/x-7z-compressed - 251.1 MB - MD5: 25a9f5a5ed866ba4e42df9a6240ca5ac

48 negative mode LC-MS acquisitions of samples, QC and blank extractions

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