Metabolome of tomato fruit pericarp of gbp1-c CRISPR mutant

Metabolomic analyses of the tomato pericarp of gbp1-c CRISPR mutants during fruit growth. The mutants have disruption of the SlGBP1 gene encoding a guanylate-binding protein. Metabolomic analyses of the tomato fruit pericarp were performed on semi-polar extracts using proton-NMR and LC-MS.

Featured Dataverses

In order to use this feature you must have at least one published dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

1 to 10 of 20 Results

Summary of NMR annotation of semi-polar extracts of tomato fruit pericarp.tab Jun 30, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type text/tab-separated-values - 3.6 KB - MD5: e1847990a40ff3c8b229dae29dfd02bc Données List of metabolites detected in the 1H-NMR spectra (500 MHz) of semi-polar extracts of tomato fruit pericarp.
NP_macro_cmd_CDBBI_18P09_CM.txt Jun 30, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type text/plain - 3.9 KB - MD5: c9e65898bcdf9b039c1ec410d1a8fa1f Code MacroCommand file to be used with NMRProcFlow tool for local baseline and realignement processing before bucketing of 1D NMR spectra
NMR Rosetta stone - Sample name codes.pdf Jul 3, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type application/pdf - 508.9 KB - MD5: eaacedf2dad59631787fb451494fc304 DocumentationDonnées Correspondance table of sample names used in NMR dataset and in the publication Musseau et al. 2020
MET-2018-P13-CM_SOP for LCMS metabolomics profiling of tomato fruit pericarp of gbp1-c mutants and Wild Type.txt Jul 3, 2020 - Positive mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type text/plain - 1.3 KB - MD5: c707e483ff40f2bb931879867789bfa7
MET-2018-P13-CM_LCMSneg_MSDIAL_Parameters.txt Jul 2, 2020 - Negative mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type text/plain - 2.2 KB - MD5: b6ee87e24103494f0d4f668024d4f625 used parameters with MSDial v3.66
MET-2018-P13-CM_LCMS_SOP for LCMS metabolomics profiling of tomato fruit pericarp of gbp1-c mutants and Wild Type.txt Jul 2, 2020 - Negative mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type text/plain - 1.3 KB - MD5: c707e483ff40f2bb931879867789bfa7
MET-2018-P13-CM_LCMS_pos_MSDIAL_Parameters_4_2019371357.txt Jul 3, 2020 - Positive mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type text/plain - 2.3 KB - MD5: c9791f9de1d0b62d728b652c3a4a74bc used parameters with MSDial v3.66
MET-2018-P13-CM_LCMS_pos_DWnorm_MSDIAL_output_4_2019371142.csv Jul 3, 2020 - Positive mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type text/csv - 1.0 MB - MD5: 2065680dca555b32890b367a7796c7f5 Data output from MSDIAL software with an additional dry-weight normalization
MET-2018-P13-CM_LCMS_pos_data.7z Jul 3, 2020 - Positive mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type application/x-7z-compressed - 1.5 GB - MD5: 62e8903701d1fc4cf6ec118e1aa7d993 48 negative mode LC-MS acquisitions of samples, QC and blank extractions
MET-2018-P13-CM_LCMS_neg_ abf_data.7z Jul 2, 2020 - Negative mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type application/x-7z-compressed - 251.1 MB - MD5: 25a9f5a5ed866ba4e42df9a6240ca5ac 48 negative mode LC-MS acquisitions of samples, QC and blank extractions

Summary of NMR annotation of semi-polar extracts of tomato fruit pericarp.tab

Jun 30, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

text/tab-separated-values - 3.6 KB - MD5: e1847990a40ff3c8b229dae29dfd02bc

Données

List of metabolites detected in the 1H-NMR spectra (500 MHz) of semi-polar extracts of tomato fruit pericarp.

NP_macro_cmd_CDBBI_18P09_CM.txt

Jun 30, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

text/plain - 3.9 KB - MD5: c9e65898bcdf9b039c1ec410d1a8fa1f

Code

MacroCommand file to be used with NMRProcFlow tool for local baseline and realignement processing before bucketing of 1D NMR spectra

NMR Rosetta stone - Sample name codes.pdf

Jul 3, 2020 - 1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

application/pdf - 508.9 KB - MD5: eaacedf2dad59631787fb451494fc304

DocumentationDonnées

Correspondance table of sample names used in NMR dataset and in the publication Musseau et al. 2020

MET-2018-P13-CM_SOP for LCMS metabolomics profiling of tomato fruit pericarp of gbp1-c mutants and Wild Type.txt

Jul 3, 2020 - Positive mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

text/plain - 1.3 KB - MD5: c707e483ff40f2bb931879867789bfa7

MET-2018-P13-CM_LCMSneg_MSDIAL_Parameters.txt

Jul 2, 2020 - Negative mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

text/plain - 2.2 KB - MD5: b6ee87e24103494f0d4f668024d4f625

used parameters with MSDial v3.66

MET-2018-P13-CM_LCMS_SOP for LCMS metabolomics profiling of tomato fruit pericarp of gbp1-c mutants and Wild Type.txt

Jul 2, 2020 - Negative mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

text/plain - 1.3 KB - MD5: c707e483ff40f2bb931879867789bfa7

MET-2018-P13-CM_LCMS_pos_MSDIAL_Parameters_4_2019371357.txt

Jul 3, 2020 - Positive mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

text/plain - 2.3 KB - MD5: c9791f9de1d0b62d728b652c3a4a74bc

used parameters with MSDial v3.66

MET-2018-P13-CM_LCMS_pos_DWnorm_MSDIAL_output_4_2019371142.csv

Jul 3, 2020 - Positive mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

text/csv - 1.0 MB - MD5: 2065680dca555b32890b367a7796c7f5

Data output from MSDIAL software with an additional dry-weight normalization

MET-2018-P13-CM_LCMS_pos_data.7z

Jul 3, 2020 - Positive mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

application/x-7z-compressed - 1.5 GB - MD5: 62e8903701d1fc4cf6ec118e1aa7d993

48 negative mode LC-MS acquisitions of samples, QC and blank extractions

MET-2018-P13-CM_LCMS_neg_ abf_data.7z

Jul 2, 2020 - Negative mode LC-MS metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type

application/x-7z-compressed - 251.1 MB - MD5: 25a9f5a5ed866ba4e42df9a6240ca5ac

48 negative mode LC-MS acquisitions of samples, QC and blank extractions

Add Data

Share Dataverse

Link Dataverse

Reset Modifications