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Biogeco Dataverse (INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement - www.inrae.fr)
BIOGECO ( BIOdiversité, GEnes & COmmunautés) est une Unité Mixte de Recherche (UMR) de l’INRAE et de l’université de Bordeaux. L’unité comprend des spécialistes de l’écologie, de la génétique des populations, quantitative et évolutive. Les activités de recherche menées par BIOGECO visent à élucider les mécanismes qui façonnent la diversité biologique dans les écosystèmes terrestres à différents niveaux hiérarchiques : communautés, espèces, populations, gènes. Les interactions entre les espèces, les populations et les individus sont donc considérés comme les principaux moteurs de la diversité.

BIOGECO ( BIOdiversity, GEnes & COmmunities) is a Joint Research Unit (UMR) of INRAE and the University of Bordeaux. The unit includes specialists in ecology, population genetics, quantitative and evolutionary. The research activities conducted by BIOGECO to elucidate the mechanisms that shape biological diversity in terrestrial ecosystems at different hierarchical levels: communities, species, populations, genes. Interactions between species, populations and individuals are taken into account as the main drivers of diversity.
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1 to 10 of 17 Results
Sep 21, 2020
Bert, Didier; Le Provost, Grégoire; Delzon, Sylvain; Plomion, Christophe; Gion, Jean-Marc, 2020, "Needle and stem histogical data for Pinus pinaster plasticity study", https://doi.org/10.15454/N8GLMY, Portail Data INRAE, V1
This dataset contains the data that correspond to the article "Needle anatomic plasticity is related to better water-use efficiency and resistance to embolism in fast-growing Pinus pinaster families in conditions of water scarcity". The dataset is composed of two files: Variables...
Aug 9, 2020 - Portail Data INRAE
Castagneyrol, Bastien; van Halder, Inge; Kadiri, Yasmine; Schillé, Laura; Jactel, Hervé, 2020, "Raw data for the paper "Host-mediated, cross-generational intraspecific competition in a multivoltine herbivore species"", https://doi.org/10.15454/KMUX39, Portail Data INRAE, V2
The file contains raw data used in the paper "Host-mediated, cross-generational intraspecific competition in a multivoltine herbivore species". `x` and `y` are the position of each box tree in the green house; `Treatment` is the prior herbivory treatment; `Clutch.number` is the t...
Aug 5, 2020 - Portail Data INRAE
Ehrenmann, Francois; Plomion, Christophe, 2020, "Oak Genome Sequencing Website", https://doi.org/10.15454/WSMRIN, Portail Data INRAE, V2
The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource by INRAE, available at http://www.oakgenome.fr/. It provides access to various resources : oak genome b...
Jul 13, 2020 - Portail Data INRAE
Lesur Kupin, Isabelle, 2020, "EPITREE project - WGS SNPs Oak", https://doi.org/10.15454/W4XFPF, Portail Data INRAE, V1
In the EPITREE project (https://www6.inrae.fr/epitree-project/Le-projet-EPITREE) we aim at studying the distribution of methylation sites in 10 oak (Q. petraea) genomes. To do so, we had to discriminate between true C/T SNPs and C>T substitutions caused by bisulfite conversion wh...
Jun 25, 2020 - Portail Data INRAE
Poeydebat, Charlotte; Jactel, Hervé; Moreira, Xoaquín; Koricheva, Julia; Barsoum, Nadia; Bauhus, Jürgen; Eisenhauer, Nico; Ferlian, Olga; Francisco, Marta; Gottschall, Felix; Gravel, Dominique; Mason, Bill; Muiruri, Evalyne W.; Muys, Bart; Nock, Charles; Paquette, Alain; Ponette, Quentin; Scherer-Lorenzen, Michael; Stokes, Victoria; Staab, Michael; Verheyen, Kris; Castagneyrol, Bastien, 2020, "Raw data for the paper - "Climate affects neighbour-induced changes in leaf chemical defences and tree diversity-herbivory relationships"", https://doi.org/10.15454/SHCUXW, Portail Data INRAE, V1
Raw data for the paper "Climate affects neighbour-induced changes in leaf chemical defences and tree diversity-herbivory relationships" by Charlotte Poeydebat and colleagues. The data file consists of a single excel document with two sheets: the 'glossary' sheet details the chara...
Jun 19, 2020
Bert, Didier; Hampe, Arndt, 2020, "Dendrochronology of 661 Quercus robur for SPONFOREST Project", https://doi.org/10.15454/A2JJFG, Portail Data INRAE, V1
15 spontaneous stands of pedunculate oak were sampled in the Landes region close to Bordeaux. In each stand, all the oaks were cored with an increment borer. The 661 cores were measured to get series of annual growth. The ring-width data were cross dated and standardized with RCS...
Apr 8, 2020 - Portail Data INRAE
Villellas, Jesus; Martín-Forés, Irene; Mariette, Stéphanie; Massot, Marie; Guichoux, Erwan; Acuña Míguez, Belén; Hampe, Arndt; Valladares, Fernando, 2020, "76 highly validated SNP markers for Juniperus thurifera", https://doi.org/10.15454/TRFS3H, Portail Data INRAE, V1
76 highly validated SNP markers for Juniperus thurifera developped from ddRAD-Seq data following Garcia et al., 2018, except the SNP detection which was performed using discoSnp++ (http://colibread.inria.fr/software/discosnp/). PCR primer sequences and single base extension prime...
Apr 8, 2020
Bert, Didier; Lebourgeois, François; Ponton, Stéphane; Musch, Brigitte; Ducousso, Alexis, 2020, "Growth data for 26 provenances of Quercus petraea and Q robur at three common gardens in France", https://doi.org/10.15454/PADEA1, Portail Data INRAE, V1, UNF:6:Ep3GgBi9KkZP2og4DL2brA== [fileUNF]
The dataset is composed of 5 columns and 1140 lines: “Garden” is the code for the common garden: 1 is for “Petite Charnie” (western France), 2 for “Vincence” (center of France) and 3 for “Sillegny” (north-eastern France) “Code” is the code number of the oak provenance “Provenance...
Apr 1, 2020 - Experimental - Observation - Simulation Dataverse
Laurent, Benoit, 2020, "A richer community of Botryosphaeriaceae within a less diverse community of fungal endophytes in grapevines than in adjacent forest trees revealed by a mixed metabarcoding strategy.", https://doi.org/10.15454/JEOT4O, Portail Data INRAE, V1, UNF:6:iSW/6jVVjeRvjMhu7p/7iw== [fileUNF]
Botryosphaeriaceae are a diverse group of endophytic fungi colonizing the inner tissue of many woody species. As opportunist pathogens, they have been increasingly involved in diebacks worldwide. Nonetheless, the diversity of Botryosphaeriaceae, especially in asymptomatic plants,...
Mar 24, 2020
Dutech, Cyril; Feau, Nicolas; Lesur, Isabelle; Ehrenmann, François; Letellier, Thomas; Li, Bayo; Mouden, Charlotte; Guichoux, Erwan; Desprez-Loustau, Marie-Laure; Gross, Andrin, 2020, "An easy and robust method for isolation and validation of single nucleotide polymorphic markers from the Erysiphe alphitoides, the oak powdery mildew, draft genome", https://doi.org/10.15454/UGMTBK, Portail Data INRAE, V2
This dataset includes the sequence and SNP data, and the scripts for detecting SNP from targeted sequences isolated from the Erysipe alphitoides draft genome. The draft genome sequencing used the SRR10956459 short reads (Bioproject: PRJNA593204). Assembly and Annotation of the dr...
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