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Grapevine Downy Mildew Genomics Dataverse (INRA - Institut National de la Recherche Agronomique)
This dataverse includes data generated for the grapevine downy mildew genome project.
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1 to 10 of 30 Results
Feb 26, 2020
Dussert, Yann; Legrand, Ludovic; Mazet, Isabelle D.; Couture, Carole; Piron, Marie-Christine; Serre, Rémy-Felix; Bouchez, Olivier; Mestre, Pere; Toffolatti, Sylvia Laura; Giraud, Tatiana; Delmotte, François, 2020, "Data from: Identification of the first oomycete mating-type locus sequence in the grapevine downy mildew pathogen, Plasmopara viticola", https://doi.org/10.15454/ILQ12T, Portail Data INRAE, V1
This dataset includes analysis files for the paper "Identification of the first oomycete mating-type locus sequence in the grapevine downy mildew pathogen, Plasmopara viticola", now published in Current Biology (doi.org/10.1016/j.cub.2020.07.057). Archives can contain README file...
application/gzip - 21.7 KB - MD5: a2f7c9fd5e8fa71cb8447e0a32eb9e0e
Information about candidate genes found in the genomic region associated with the mating type phenotype. Includes protein sequences, genomic coordinates & functional annotation.
application/gzip - 67.4 MB - MD5: b262cfffc8f4a3c76a062d39948e3823
Data files for the de novo SNP calling analysis with discoSNP. Includes VCF files, results of association analyses and re-assembly of the mating type region.
application/gzip - 1.1 GB - MD5: 45ad15ee3eea7bd8afed50e444c08102
Data files for the genotyping of the 54 individuals (reference-based SNP calling) used in the paper. Includes VCF file, results of the association analysis, and read coverage along the genome.
application/gzip - 11.9 KB - MD5: b09780cb11e46844ac07dd0bcb852a89
Data files for the new contig originating from re-assembly of the mating type region. Includes sequence file, gene & repeat annotations, and functional annotation.
Feb 7, 2020
Couture, Carole, 2020, "http://grapevine-downy-mildew-genome.com/", https://doi.org/10.15454/U1VH0Z, Portail Data INRAE, V1
website about grapevine downy mildew genome
Feb 6, 2020
Dussert, Yann; Couture, Carole; Mazet, Isabelle D.; Gouzy, Jérôme; Piron, Marie-Christine; Kuchly, Claire; Bouchez, Olivier; Rispe, Claude; Mestre, Pere; Delmotte, François, 2018, "Genome assembly and annotation of Plasmopara viticola, the grapevine downy mildew pathogen", https://doi.org/10.15454/4NYHD6, Portail Data INRAE, V4
This dataset includes the assembly and annotation of the Plasmopara viticola genome (INRA-PV221 isolate), following genome sequencing using PacBio long reads at deep coverage. The paper describing the genome is now published in Genome Biology and Evolution (doi.org/10.1093/gbe/ev...
application/gzip - 17.0 KB - MD5: 17b174ac1dcf9a2831e67beecd69bb5e
Complete sequence and gene/rRNA/tRNA annotation for the mitochondrion of Plasmopara viticola. NOT described in the MBE paper.
Jul 12, 2019
Dussert, Yann; Gouzy, Jerome; Richart-Cervera, Sylvie; Mazet, Isabelle; Deliere, Laurent; Couture, Carole; Legrand, Ludovic; Piron, Marie-Christine; Bouchez, Olivier; Mestre, Pere; Delmotte, Francois, 2019, "Gene annotation of the Illumina draft of the Plasmopara viticola genome", https://doi.org/10.15454/NQEX46, Portail Data INRAE, V1
This dataset includes the gene annotation for the Illumina draft of the Plasmopara viticola genome. This genome draft has been published in Dussert et al. 2016 (doi.org/10.1128/genomeA.00987-16). The assembly can be found on GenBank (accession GCA_001695595.1).
application/gzip - 2.9 MB - MD5: cb199caea7d2d81913a2dcb1b77ce4b6
Gene annotation in gff3 format.
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