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1 to 10 of 32 Results
Jan 10, 2020 - ThaliaDB maize Dataverse
Nicolas, Stephane; Negro, Sandra; Madur, Delphine; Clipet, Camille; Combes, Valérie; Bauland, Cyril; Tardieu, François; Charcosset, Alain; Moreau, Laurence, 2020, "Amaizing Dent Panel Genotyping Dataset (354 Public Lines)", https://doi.org/10.15454/GAHEU0, Portail Data INRAE, V1, UNF:6:xDkI2MetKCmc6/d1u04ZkA== [fileUNF]
Genotyping matrix of a collection of 354 dent maize inbred lines corresponding to the "Public Amaizing Dent Panel". This panel includes: (i) 254 dent inbred lines from "Drops panel" assembled in the frame of F7P European projects DROPs (FP7-244374, PI: F. Tardieu) and (ii) 100 de...
Feb 7, 2020 - ThaliaDB maize Dataverse
Rio Simon, 2020, "FlintDent GWAS dataset", https://doi.org/10.15454/OQT5CY, Portail Data INRAE, V1
This dataset corresponds to the data associated with the study: "Disentangling group specific QTL allele effects from genetic background epistasis in GWAS: an application to maize flowering" by Rio et al. (2019). The data includes genotypic and phenotypic information for a panel...
Feb 10, 2020 - Biogeco Dataverse
Ehrenmann, Francois; Kremer, Antoine; Truffaut, Laura, 2020, "TREEPEACE project website", https://doi.org/10.15454/LU5QHT, Portail Data INRAE, V1
TREEPEACE project website There are widespread concerns that trees, due to their long life-span, are not able to cope with the rapid ongoing climate change. While many studies have so far investigated potential impacts of climate change on forests, much less attention has been gi...
Feb 18, 2020 - Omics Dataverse
Vacher, Corinne, 2020, "R scripts for "Pauvert et al. 2019. Microbial association networks give relevant insights into plant pathobiomes. BioRxiv, https://doi.org/10.1101/2020.02.21.958033"", https://doi.org/10.15454/5WD6P6, Portail Data INRAE, V1, UNF:6:LNjhKptvEnA9T2eqRWfBNQ== [fileUNF]
R scripts and datafiles used to infer microbial association networks from metabarcoding data of grapevine foliar samples infected or not by powdery mildew (Erysiphe necator). R script used to search for microbial associations in the Scopus database.
Feb 24, 2020 - Portail Data INRAE
Rivera, Sinziana; Vasselon, Valentin; May, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” - Macroinvertebrate reference library", https://doi.org/10.15454/UNUFWY, Portail Data INRAE, V1
These data supplement the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to...
Feb 24, 2020 - Portail Data INRAE
Rivera, Sinziana; Vasselon, Valentin; Mary, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” - raw MiSeq data, inventories", https://doi.org/10.15454/SXKA8I, Portail Data INRAE, V2, UNF:6:qkDWkBPhUOQHwccJmQL5Ng== [fileUNF]
These data supplement the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to “Molecular...
Mar 24, 2020 - Biogeco Dataverse
Dutech, Cyril; Feau, Nicolas; Lesur, Isabelle; Ehrenmann, François; Letellier, Thomas; Li, Bayo; Mouden, Charlotte; Guichoux, Erwan; Desprez-Loustau, Marie-Laure; Gross, Andrin, 2020, "An easy and robust method for isolation and validation of single nucleotide polymorphic markers from the Erysiphe alphitoides, the oak powdery mildew, draft genome", https://doi.org/10.15454/UGMTBK, Portail Data INRAE, V2
This dataset includes the sequence and SNP data, and the scripts for detecting SNP from targeted sequences isolated from the Erysipe alphitoides draft genome. The draft genome sequencing used the SRR10956459 short reads (Bioproject: PRJNA593204). Assembly and Annotation of the dr...
Apr 1, 2020 - Experimental - Observation - Simulation Dataverse
Laurent, Benoit, 2020, "A richer community of Botryosphaeriaceae within a less diverse community of fungal endophytes in grapevines than in adjacent forest trees revealed by a mixed metabarcoding strategy.", https://doi.org/10.15454/JEOT4O, Portail Data INRAE, V1, UNF:6:iSW/6jVVjeRvjMhu7p/7iw== [fileUNF]
Botryosphaeriaceae are a diverse group of endophytic fungi colonizing the inner tissue of many woody species. As opportunist pathogens, they have been increasingly involved in diebacks worldwide. Nonetheless, the diversity of Botryosphaeriaceae, especially in asymptomatic plants,...
Apr 8, 2020 - Biogeco Dataverse
Bert, Didier; Lebourgeois, François; Ponton, Stéphane; Musch, Brigitte; Ducousso, Alexis, 2020, "Growth data for 26 provenances of Quercus petraea and Q robur at three common gardens in France", https://doi.org/10.15454/PADEA1, Portail Data INRAE, V1, UNF:6:Ep3GgBi9KkZP2og4DL2brA== [fileUNF]
The dataset is composed of 5 columns and 1140 lines: “Garden” is the code for the common garden: 1 is for “Petite Charnie” (western France), 2 for “Vincence” (center of France) and 3 for “Sillegny” (north-eastern France) “Code” is the code number of the oak provenance “Provenance...
Apr 8, 2020 - Portail Data INRAE
Villellas, Jesus; Martín-Forés, Irene; Mariette, Stéphanie; Massot, Marie; Guichoux, Erwan; Acuña Míguez, Belén; Hampe, Arndt; Valladares, Fernando, 2020, "76 highly validated SNP markers for Juniperus thurifera", https://doi.org/10.15454/TRFS3H, Portail Data INRAE, V1
76 highly validated SNP markers for Juniperus thurifera developped from ddRAD-Seq data following Garcia et al., 2018, except the SNP detection which was performed using discoSnp++ (http://colibread.inria.fr/software/discosnp/). PCR primer sequences and single base extension prime...
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