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11 to 20 of 32 Results
Sep 15, 2020 - Portail Data INRAE
Denancé, Caroline; Muranty, Hélène; Durel, Charles-Eric, 2020, "MUNQ - Malus UNiQue genotype code for grouping apple accessions corresponding to a unique genotypic profile", https://doi.org/10.15454/HKGMAS, Portail Data INRAE, V1
This dataset corresponds to the assignment of MUNQ (Malus UNiQue genotype) codes to a large set of apple accessions genotyped with common SSR (microsatellite) markers. The MUNQ assignment was performed as described in Muranty-Denancé et al. (2020; https://doi.org/10.1186/s12870-0...
May 29, 2020 - Portail Data INRAE
Laguerre, Sandrine, 2020, "MINTIA paper Biological samples", https://doi.org/10.15454/AH8CRS, Portail Data INRAE, V1
Reads corresponding to the biological samples initially analysed in "Investigating Host Microbiota Relationships Through Functional Metagenomics" of Laville et al and used to validate MINTIA pipeline on biological samples. The assembled and annotated fosmids of Laville et al are...
Jan 19, 2021 - Portail Data INRAE
Gay, Laurene, 2020, "Medicago truncatula flowering time data from: Evolution of flowering time in a selfing annual plant - Roles of adaptation and genetic drift", https://doi.org/10.15454/ZY83BE, Portail Data INRAE, V3, UNF:6:lq8IWDHWtTyKiDh07aSTRg== [fileUNF]
Phenotypic and genetic dataset for a population of Medicago truncatula located in Cape Corsica (CO3), analysed in "Evolution of flowering time in a selfing annual plant: Roles of adaptation and genetic drift". The readme file summarizes the different datasets available.
Dec 9, 2020 - Biogeco Dataverse
Alexandre, Hermine; Truffaut, Laura; Klein, Etienne; Ducousso, Alexis; Chancerel, Emilie; Lesur, Isabelle; Dencausse, Benjamin; Louvet, Jean-Marc; Nepveu, Gérard; Torres-Ruiz, José M.; Lagane, Frédéric; Musch, Brigitte; Delzon, Sylvain; Kremer, Antoine, 2020, "Long term monitoring of evolutionary changes in oak stands", https://doi.org/10.15454/XL23BS, Portail Data INRAE, V1, UNF:6:9upGid54ouhcG7oBqApC8Q== [fileUNF]
This dataset is composed of 4 files : The file EcologyG1&G2 provides ecological data assessed on the level of each tree (G1 and G2) and derived from a floristic survey. Details about the assessments of the ecological data are provided in Truffaut et al (2017, Article p. 127 and S...
Dec 1, 2020 - Select SNP for Imputation
Herault, Frederic, 2020, "Instructions for use SS4I Software", https://doi.org/10.15454/PD5RDB, Portail Data INRAE, V1
Instructions for use SS4I Software
Apr 8, 2020 - Biogeco Dataverse
Bert, Didier; Lebourgeois, François; Ponton, Stéphane; Musch, Brigitte; Ducousso, Alexis, 2020, "Growth data for 26 provenances of Quercus petraea and Q robur at three common gardens in France", https://doi.org/10.15454/PADEA1, Portail Data INRAE, V1, UNF:6:Ep3GgBi9KkZP2og4DL2brA== [fileUNF]
The dataset is composed of 5 columns and 1140 lines: “Garden” is the code for the common garden: 1 is for “Petite Charnie” (western France), 2 for “Vincence” (center of France) and 3 for “Sillegny” (north-eastern France) “Code” is the code number of the oak provenance “Provenance...
Dec 30, 2020 - Portail Data INRAE
Julier, Bernadette, 2020, "Genetic diversity for seed germination in response to temperature and scarification / Diversité génétique pour la germination des graines de luzerne en réponse à la température et à la scarification", https://doi.org/10.15454/YIECZS, Portail Data INRAE, V1, UNF:6:SaRyQd8LfUD4f7gDPMnhiw== [fileUNF]
Lucerne (Medicago sativa), a major perennial pasture legume, belongs to a species complex that includes several subspecies with wild and cultivated populations. Stand establishment may be compromised by poor germination. Seed scarification and deterioration as well as temperature...
Dec 8, 2020 - ThaliaDB maize Dataverse
Nicolas, Stéphane; Madur, Delphine; Charcosset, Alain; Bauland, Cyril; Combes, Valérie; Berard, Aurélie; Arca, Mariangela; Mary-Huard, Tristan; Le Paslier, Marie-Christine; Gouesnard, Brigitte, 2020, "Fluorescence intensity datasets and R scripts to predict allelic frequencies in DNA bulks using maize 50K Illumina array", https://doi.org/10.15454/GANJ7J, Portail Data INRAE, V1, UNF:6:IvZiMGs4Oo8oWZqgBbcDdA== [fileUNF]
R scripts and fluorescence intensity datasets of 24 controlled pools and 327 inbred lines panels extracted from 50K Illumina Infinium HD array (Ganal et al., 2010). These datasets and R scripts can be used to calibrate a model to predict allelic frequencies in new DNA bulks using...
Feb 7, 2020 - ThaliaDB maize Dataverse
Rio Simon, 2020, "FlintDent GWAS dataset", https://doi.org/10.15454/OQT5CY, Portail Data INRAE, V1
This dataset corresponds to the data associated with the study: "Disentangling group specific QTL allele effects from genetic background epistasis in GWAS: an application to maize flowering" by Rio et al. (2019). The data includes genotypic and phenotypic information for a panel...
Jul 13, 2020 - Portail Data INRAE
Lesur Kupin, Isabelle, 2020, "EPITREE project - WGS SNPs Oak", https://doi.org/10.15454/W4XFPF, Portail Data INRAE, V1
In the EPITREE project (https://www6.inrae.fr/epitree-project/Le-projet-EPITREE) we aim at studying the distribution of methylation sites in 10 oak (Q. petraea) genomes. To do so, we had to discriminate between true C/T SNPs and C>T substitutions caused by bisulfite conversion wh...
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