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1 to 10 of 24 Results
Sep 13, 2021 - Portail Data INRAE
Le Chatelier, Emmanuelle; Almeida, Mathieu; Plaza Oñate, Florian; Pons, Nicolas; Gauthier, Franck; Ghozlane, Amine; Ehrlich, Stanislav Dusko; Witherden, Elizabeth; Gomez-Cabrero, David, 2021, "A catalog of genes and species of the human oral microbiota", https://doi.org/10.15454/WQ4UTV, Portail Data INRAE, V2, UNF:6:Bd2wTRePL+8xQgnahkG5CA== [fileUNF]
A catalog of genes and species of the human oral microbiota
application/x-gzip - 1.9 MB - MD5: 6f97dc23e076111b9608ca4074fd9709
Functional annotation of the gene catalog with the CAZy database
Sep 13, 2021 - Portail Data INRAE
Plaza Onate, Florian; Pons, Nicolas; Gauthier, Franck; Almeida, Mathieu; Ehrlich, Stanislav Dusko; Le Chatelier, Emmanuelle, 2021, "Updated Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota", https://doi.org/10.15454/FLANUP, Portail Data INRAE, V2, UNF:6:FWhI4eW+F6Bx/iR6cF7tcA== [fileUNF]
Updated Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota built by binning co-abundant genes of the IGC2 catalog with MSPminer. MSPs were used to estimate species abundance and perform functional analysis in the Human Gut Microbiome Atlas For more in...
application/x-gzip - 1.8 MB - MD5: 45bff49f458017e47a63dea775ed7a85
Functional annotation of the gene catalog with the CAZy database
text/tab-separated-values - 233.9 KB - MD5: ce58246e059adc0fe20bc7d2347f1c1b
Taxonomic annotation of MetaGenomic Species
application/x-gzip - 27.0 MB - MD5: cfcb742267d0572d1f9daeb731bba212
Gene content of the 853 Metagenomic Species
application/x-gzip - 2.7 GB - MD5: 5dd86ec60170adc0195dbc789f6649ce
Non-redundant gene catalog of the human oral microbiota
Apr 23, 2021 - Portail Data INRAE
Plaza Onate, Florian; Ghozlane, Amine; Almeida, Mathieu, 2021, "An updated catalog of genes and species of the pig gut microbiota", https://doi.org/10.15454/OPAULL, Portail Data INRAE, V1, UNF:6:Ggdc9+Ypa5HI+KYp/YYwqw== [fileUNF]
Dataset overview We built an updated catalog of 9.3M genes found in the pig gut microbiota. Co-abundant genes were binned in 1523 Metagenomic Species Pan-genomes (MSPs) for which we provide taxonomic labels and a phylogenetic tree. In addition, we reconstituted 7059 Metagenome-As...
application/x-gzip - 60.8 MB - MD5: e3d2ba49a27790819f6be7396a17da6c
Sequences of viral genomes
application/x-gzip - 30.1 KB - MD5: c116b1f2477782e7d5ae0876de3a1e46
Phylogenetic tree of the Metagenomic Species based on the alignment of 39 universal single-copy marker genes
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