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Jul 6, 2021 - Portail Data INRAE
Le Chatelier, Emmanuelle; Almeida, Mathieu; Plaza Oñate, Florian; Pons, Nicolas; Gauthier, Franck; Ghozlane, Amine; Ehrlich, Stanislav Dusko; Witherden, Elizabeth; Gomez-Cabrero, David, 2021, "A catalog of genes and species of the human oral microbiota", https://doi.org/10.15454/WQ4UTV, Portail Data INRAE, V1, UNF:6:Bd2wTRePL+8xQgnahkG5CA== [fileUNF]
A catalog of genes and species of the human oral microbiota
Apr 23, 2021 - Portail Data INRAE
Plaza Onate, Florian; Ghozlane, Amine; Almeida, Mathieu, 2021, "An updated catalog of genes and species of the pig gut microbiota", https://doi.org/10.15454/OPAULL, Portail Data INRAE, V1, UNF:6:Ggdc9+Ypa5HI+KYp/YYwqw== [fileUNF]
Dataset overview We built an updated catalog of 9.3M genes found in the pig gut microbiota. Co-abundant genes were binned in 1523 Metagenomic Species Pan-genomes (MSPs) for which we provide taxonomic labels and a phylogenetic tree. In addition, we reconstituted 7059 Metagenome-As...
Apr 6, 2021 - Portail Data INRAE
Plaza Onate, Florian; Pons, Nicolas; Gauthier, Franck; Almeida, Mathieu; Ehrlich, Stanislav Dusko; Le Chatelier, Emmanuelle, 2021, "Updated Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota", https://doi.org/10.15454/FLANUP, Portail Data INRAE, V1, UNF:6:FWhI4eW+F6Bx/iR6cF7tcA== [fileUNF]
Updated Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota built by binning co-abundant genes of the IGC2 catalog with MSPminer. MSPs were used to estimate species abundance and perform functional analysis in the Human Gut Microbiome Atlas For more in...
Dec 21, 2020 - Portail Data INRAE
Plaza Oñate, Florian; Le Chatelier, Emmanuelle, 2020, "Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota", https://doi.org/10.15454/QVCYRB, Portail Data INRAE, V1, UNF:6:SHslgNFGrMNfkIbfGdqHpw== [fileUNF]
Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota built by binning co-abundant genes of the IGC catalog with MSPminer. This dataset is the same as the one published with the original paper except we updated the taxonomic annotation and phylogeny.
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