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1 to 10 of 102 Results
text/plain - 3.2 MB - MD5: 80cea844a986fd903a0dfe48a238af9f
data from a previously published life-stage specific RNA-seq analysis of M. incognita transcriptome during tomato plant infection (Blanc-Mathieu et al. 2017). This analysis encompassed four different life stages: (i) eggs, (ii) pre-parasitic second stage juveniles (J2), (iii)...
application/vnd.realvnc.bed - 785.1 KB - MD5: e0dbd7b0ee15f5e6358ca51d792c4992
M. incognita 'canonical' TE annotation from Kozlowski D. 2020a. Transposable Elements prediction and annotation in the M. incognita genome. Portail Data INRAE [Internet]. Available from: https://doi.org/10.15454/EPTDOS
text/tab-separated-values - 1.8 MB - MD5: 5741fda1997fc7fe45b01c2c6b57feb5
text/tab-separated-values - 40.3 MB - MD5: 4bc959b9571abdab7b789e0291fb3402
Fluorescence Intensity Ratios for 32,788 SNPs on 20 samples corresponding to 10 duplicated landraces. This table has 5 columns with headers as follows: "SNP.Name","Sample.name","X","Y", "RatioObs". These columns correspond to name of SNP, name of sample, fluorescence in...
text/x-r-source - 6.0 KB - MD5: 90e666cd6d8619a15288e93046d9b58b
- R scripts (Pipeline) that apply R functions (04_Function_PredAllFreqInDNABulk_Publi.R) to two training datasets corresponding to fluorescence intensity data of 327 lines (1_Train_set_327lines_32788SNP.tsv ) and two series of controlled pools (2_Train_set_24pools_TF_1000SNP.tab)...
application/octet-stream - 120.4 MB - MD5: 1fa210e1bb53eb544a270b1e7f23401d
application/vnd.americandynamics.acc - 37.7 KB - MD5: 05584d795f41f6e26c142c6e87d3a9ed
Proteins with SP, noTM and a MERCI effector motif
text/tab-separated-values - 197.2 KB - MD5: 648b8aade271b14125975b9f78709bd2
Summary of HGT candidates and functional annotation. Sheet1: Possible HGT (AI>0). Sheet2: Likely HGT (AI>14). For these, AI and HGT scores are given as well as representative Interpro domain, orthogroup and whether this is a previously reported HGT case. Sheet3: Known HGT in root...
image/tiff - 2.1 MB - MD5: bb73b1a6ae32f2deec4af523faccd624
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00026' in 12 isolates of M. incognita.
image/tiff - 2.1 MB - MD5: 04a7eaae5de46d1e9746ac70b19f5b92
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00450' in 12 isolates of M. incognita.
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