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1 to 10 of 12 Results
Feb 10, 2020 - Biogeco Dataverse
Ehrenmann, Francois; Kremer, Antoine; Truffaut, Laura, 2020, "TREEPEACE project website",, Portail Data INRAE, V1
TREEPEACE project website There are widespread concerns that trees, due to their long life-span, are not able to cope with the rapid ongoing climate change. While many studies have so far investigated potential impacts of climate change on forests, much less attention has been gi...
Jul 28, 2021
Vacher, Corinne, 2021, "Statistical analysis scripts to analyze metabarcoding data of fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvignon’)",, Portail Data INRAE, V2
This archive provides the statistical analysis scripts used to analyze a metabarcoding dataset (available at representing foliar fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvi...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Pirsicila; Togawa, Roberto, 2020, "PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle",, Portail Data INRAE, V1, UNF:6:Q6V0cPfaBNCHOg5KABL/1g== [fileUNF]
Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit over than in other PPN against the NCBI's nr. - the protein does not belong to a multigene family - the co...
May 17, 2021 - URGI Plant and Fungi Dataverse
Michotey, Celia; Vauthier, Denis; Fady, Bruno, 2021, "Phenotypic trait dataset of Pinus pinea measured in the common gardens of the Forest Genetics Network for Research and Experimentation (GEN4X)",, Portail Data INRAE, V1
This dataset is composed of observations such as height, circumference, cone number, survival and forking, made until 2012 in 7 Pinus pinea provenance trials of the French common gardens network GEN4X (forest genetics network for research and experimentation). It makes possible t...
Aug 5, 2020 - Portail Data INRAE
INRAE, 2020, "Oak Genome Sequencing Website",, Portail Data INRAE, V2
The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource by INRAE, available at It provides access to various resources : oak genome b...
Sep 17, 2019 - EPGV
Toda, Nicholas, 2019, "NLGenomeSweeper",, Portail Data INRAE, V1
NLGenomeSweeper is a command line bash pipeline that searches a genome for NBS-LRR (NLR) disease resistance genes based on the presence of the NB-ARC domain using the consensus sequence of the Pfam HMM profile (PF00931) and class specific consensus sequences built from Vitis vini...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Grynberg, Priscila, 2021, "Mapping of known effector genes on five Meloidogyne genomes",, Portail Data INRAE, V1
Based on the literature, we established a manually curated list of M. incognita genes specifically expressed in sub-ventral or dorsal secretory gland cells. We started from the list published in (Truong, Nguyen, Abad, Quentin, & Favery, 2015) and manually checked the figures asso...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Da Rocha, Martine; Eves-van den Akker, Sebastian; Bournaud, Caroline, 2021, "Genes differentially expressed across four life stages in M. incognita and GO enrichments",, Portail Data INRAE, V1, UNF:6:+u0fQZJ31YfvnCdRJnanQg== [fileUNF]
Meloidogyne incognita protein-coding genes differentially expressed at four stages during the parasitic life cycle: - eggs - pre-parasitic second stage juvenile (J2) - mix of parasitic second, third and fourth stage juveniles (J3) - adult females The genes show significantly diff...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Pere, Arthur, 2021, "Enriched GO terms in the eight clusters of differentially expressed genes",, Portail Data INRAE, V1, UNF:6:zAVi7N8nqLznWAQu0l7wPg== [fileUNF]
Enriched gene ontology terms in each of the eight clusters of differentially-expressed M. incognita genes. For each cluster (A-H), enriched GO terms, as compared to the whole set of differentially expressed genes, were identified using a hypergeometric test as implemented in the...
Aug 3, 2018
Pauvert, Charlie; Buée, Marc; Laval, Valérie; Edel-Hermann, Véronique; Fauchery, Laure; Gautier, Angélique; Lesur Kupin, Isabelle; Vallance, Jessica; Vacher, Corinne, 2018, "DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.",, Portail Data INRAE, V1
This sequence dataset (FASTQ format) was obtained by metabarcoding an artificial (mock) fungal community. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platform (v3 chemistry, 2x250 bp)...
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