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1 to 10 of 18 Results
Jun 3, 2021 - Biogeco Dataverse
Ehrenmann, Francois; Chaumeil,Philippe; Plomion, Christophe, 2021, "Plan de Gestion de Données UMR BIOGECO", https://doi.org/10.15454/XS1RPM, Portail Data INRAE, V2
Plan de gestion des données de l'UMR INRAE BIOGECO Vous pouvez citer le DOI de ce plan comme source, mais l'utilisation de toute partie mise à jour de ce plan n'implique pas que le(s) créateur(s) soutienne(nt) ou ait(nt) un quelconque lien avec votre projet ou votre soumission. C...
May 26, 2021 - SunfloDry
Berton, Thierry; Bernillon, Stéphane; Fernandez, Olivier; Flandin, Amélie; Cassan, Cédric, 2021, "Data set for LC-MS", https://doi.org/10.15454/2KOXOH, Portail Data INRAE, V2, UNF:6:sTPggJ4zJxRMvffzf4zUDA== [fileUNF]
Metabolomic analyses of leaf of sunflower plants cultivated outdoors in a phenotyping facility in well-watered or water-deficit conditions. Analyses performed on 24 genotypes (8 lines and their corresponding 16 hybrids) using LC-Orbitrap-MS of leaf extracts.
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Pere, Arthur, 2021, "Enriched GO terms in the eight clusters of differentially expressed genes", https://doi.org/10.15454/V3SCRC, Portail Data INRAE, V1, UNF:6:zAVi7N8nqLznWAQu0l7wPg== [fileUNF]
Enriched gene ontology terms in each of the eight clusters of differentially-expressed M. incognita genes. For each cluster (A-H), enriched GO terms, as compared to the whole set of differentially expressed genes, were identified using a hypergeometric test as implemented in the...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Bailly-Bechet, Marc; Dazeniere, Julie, 2021, "Expression clusters of differentially-expressed M. incognita genes", https://doi.org/10.15454/2XJCJQ, Portail Data INRAE, V1, UNF:6:rdh3jgp0aX/AcUw+rrlnwg== [fileUNF]
Distribution of the 12,461 differentially expressed M. incognita genes on 8 expression clusters (named A to H). Files named ClusterA-H.txt list the genes present in each expression clusters. The file named Clusters.xlsx summarizes the distribution of all these genes across the 8...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Grynberg, Priscila, 2021, "Mapping of known effector genes on five Meloidogyne genomes", https://doi.org/10.15454/P5YIGX, Portail Data INRAE, V1
Based on the literature, we established a manually curated list of M. incognita genes specifically expressed in sub-ventral or dorsal secretory gland cells. We started from the list published in (Truong, Nguyen, Abad, Quentin, & Favery, 2015) and manually checked the figures asso...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Da Rocha, Martine; Eves-van den Akker, Sebastian; Bournaud, Caroline, 2021, "Genes differentially expressed across four life stages in M. incognita and GO enrichments", https://doi.org/10.15454/VLN8UC, Portail Data INRAE, V1, UNF:6:+u0fQZJ31YfvnCdRJnanQg== [fileUNF]
Meloidogyne incognita protein-coding genes differentially expressed at four stages during the parasitic life cycle: - eggs - pre-parasitic second stage juvenile (J2) - mix of parasitic second, third and fourth stage juveniles (J3) - adult females The genes show significantly diff...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne, 2021, "Ancestral reconstruction of the origin of M. incognita effectors in the Meloidogyne genus", https://doi.org/10.15454/OJMRDD, Portail Data INRAE, V1, UNF:6:K4noZaEQBBmM7ZCn8ESQNQ== [fileUNF]
Based on the mapping of non-redundant known M. incognita subventral (SvG) and dorsal (DG) gland effectors on the genomes of five Meloidogyne species ancestral numbers were deduced across their phylogeny using parsimony inference with Mesquite (Maddison & Maddison, 2014). In the g...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne, 2021, "Negative set used to identify enriched motif in effectors regulatory regions", https://doi.org/10.15454/KYPEN0, Portail Data INRAE, V1, UNF:6:mGf+rYvwNVIPGNrAaDiBhQ== [fileUNF]
As negative set, we selected 167 M. incognita genes from an Orthofinder analysis (Emms & Kelly, 2019) previously performed on 64 genomes, including 62 nematodes and two outgroup tardigrade species (Grynberg et al., 2020). The selection criteria were as follows: (i) the vast major...
Feb 16, 2021 - URGI Plant and Fungi Dataverse
Michotey, Celia, 2021, "Plant Bioinformatics Facility data management plan", https://doi.org/10.15454/9HM5UI, Portail Data INRAE, V1
Data management plan of the Plant Bioinformatics Facility, hosted at URGI. Copyrights The creator(s) of this plan accept(s) that all or part of the text may be reused and personalized if necessary for another plan. You can cite this plan’s DOI as the source, but the use of any up...
Jan 8, 2021 - Metabolomic responses of maize leaf to progressive controlled chilling
Urrutia, Maria; Bernillon, Stéphane; Moing, Annick, 2020, "LC-MS metabolomic analyses of maize young leaf cultivated in a growth chamber", https://doi.org/10.15454/J9KO72, Portail Data INRAE, V2, UNF:6:HTEu5gdg6G3uO2MDAMHGWQ== [fileUNF]
Analyses performed on 18 genetically-diverse hybrids using leaf methanolic extracts.
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