Skip to main content
Scheduled Maintenance – Data INRAE will be unavailable on thursday 07/29 from 12:00 to 14:00 (CEST) due to the deployment of a new version.
Omics Dataverse (www.inrae.fr)
Dataverse dédié aux données issues d’analyses de génomique, transcriptomique, protéomique, métabolomique, etc.
Dataverse dedicated to data from genomics, transcriptomics, proteomics, metabolomics etc., analysis
Featured Dataverses

In order to use this feature you must have at least one published dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

Find
Advanced Search

21 to 30 of 81,229 Results
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Grynberg, Priscila, 2021, "Mapping of known effector genes on five Meloidogyne genomes", https://doi.org/10.15454/P5YIGX, Portail Data INRAE, V1
Based on the literature, we established a manually curated list of M. incognita genes specifically expressed in sub-ventral or dorsal secretory gland cells. We started from the list published in (Truong, Nguyen, Abad, Quentin, & Favery, 2015) and manually checked the figures asso...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Pere, Arthur, 2021, "Enriched gene ontology terms in upregulated genes at the transition from adult females to eggs", https://doi.org/10.15454/6EYGIX, Portail Data INRAE, V1
Analysis of differentially represented (over and under) Gene Ontology (GO) terms in the genes showing significant up-regulation at the transition between the eggs and the pre-parasitic J2 stage. GO over and under representation of terms are according to the hypergeometric test as...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Pere, Arthur, 2021, "Enriched gene ontology terms in upregulated genes at the transition from J3-J4 larvae to adult females", https://doi.org/10.15454/5UJNHS, Portail Data INRAE, V1
Analysis of differentially represented (over and under) Gene Ontology (GO) terms in the genes showing significant up-regulation at the transition between the J3-J4 mixed stages and the adult female stage. GO over and under representation of terms are according to the hypergeometr...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Pere, Arthur, 2021, "Enriched gene ontology terms in upregulated genes at the transition from eggs to J2", https://doi.org/10.15454/NOT2LH, Portail Data INRAE, V1
Analysis of differentially represented (over and under) Gene Ontology (GO) terms in the genes showing significant up-regulation at the transition between the eggs and the pre-parasitic J2 stage. GO over and under representation of terms are according to the hypergeometric test as...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Da Rocha, Martine; Eves-van den Akker, Sebastian; Bournaud, Caroline, 2021, "Genes differentially expressed across four life stages in M. incognita and GO enrichments", https://doi.org/10.15454/VLN8UC, Portail Data INRAE, V1, UNF:6:+u0fQZJ31YfvnCdRJnanQg== [fileUNF]
Meloidogyne incognita protein-coding genes differentially expressed at four stages during the parasitic life cycle: - eggs - pre-parasitic second stage juvenile (J2) - mix of parasitic second, third and fourth stage juveniles (J3) - adult females The genes show significantly diff...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne, 2021, "Ancestral reconstruction of the origin of M. incognita effectors in the Meloidogyne genus", https://doi.org/10.15454/OJMRDD, Portail Data INRAE, V1, UNF:6:K4noZaEQBBmM7ZCn8ESQNQ== [fileUNF]
Based on the mapping of non-redundant known M. incognita subventral (SvG) and dorsal (DG) gland effectors on the genomes of five Meloidogyne species ancestral numbers were deduced across their phylogeny using parsimony inference with Mesquite (Maddison & Maddison, 2014). In the g...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne, 2021, "Negative set used to identify enriched motif in effectors regulatory regions", https://doi.org/10.15454/KYPEN0, Portail Data INRAE, V1, UNF:6:mGf+rYvwNVIPGNrAaDiBhQ== [fileUNF]
As negative set, we selected 167 M. incognita genes from an Orthofinder analysis (Emms & Kelly, 2019) previously performed on 64 genomes, including 62 nematodes and two outgroup tardigrade species (Grynberg et al., 2020). The selection criteria were as follows: (i) the vast major...
Parasitic transcriptome regulation in M. incognita(INRA - Institut National de la Recherche Agronomique)
Apr 26, 2021Gene expression in agricultural pests
Gene expression in agricultural pests(INRA - Institut National de la Recherche Agronomique)
Apr 26, 2021Genomic Innovation in Agricultural Pests
Apr 23, 2021 - Portail Data INRAE
Plaza Onate, Florian; Ghozlane, Amine; Almeida, Mathieu, 2021, "An updated catalog of genes and species of the pig gut microbiota", https://doi.org/10.15454/OPAULL, Portail Data INRAE, V1, UNF:6:Ggdc9+Ypa5HI+KYp/YYwqw== [fileUNF]
Dataset overview We built an updated catalog of 9.3M genes found in the pig gut microbiota. Co-abundant genes were binned in 1523 Metagenomic Species Pan-genomes (MSPs) for which we provide taxonomic labels and a phylogenetic tree. In addition, we reconstituted 7059 Metagenome-As...
Add Data

Sign up or log in to create a dataverse or add a dataset.

Share Dataverse

Share this dataverse on your favorite social media networks.

Link Dataverse
Reset Modifications

Are you sure you want to reset the selected metadata fields? If you do this, any customizations (hidden, required, optional) you have done will no longer appear.

Contact Portail Data INRAE Support

Portail Data INRAE Support

Please fill this out to prove you are not a robot.

+ =