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1 to 10 of 126 Results
Aug 20, 2018 - GnpIS Dataverse
François-Xavier Oury; Emmanuel Heumez; Bernard Rolland; Jérôme Auzanneau; Pierre Bérard; Maryse Brancourt-Hulmel; Xavier Charrier; Hubert Chiron; Camille Depatureaux; Laurent Falchetto; Olivier Gardet; Stéphane Gilles; Alex Giraud; Christophe Lecomte; Jean-Yves Morlais; Pierre Pluchard; Didier Tropée; Maxime Trottet; Patrice Walczak; Gérard Doussinault; Michel Rousset; Gilles Charmet, 2018, "Winter wheat (Triticum aestivum L) phenotypic data from the multiannual, multilocal field trials of the INRA Small Grain Cereals Network.", https://doi.org/10.15454/1.4489666216568333E12, Portail Data INRAE, V5
Abstract:Winter wheat phenotypic data from a French experimental network. It includes observations for different characters (agronomic, quality, disease, phenology,…) on more than 10 experimental locations during more than 15 years and for more than 1700 winter wheat genotypes.
Nov 12, 2019 - URGI Plant and Fungi Dataverse
Duchêne, Eric, 2019, "Vitis vinifera cv. Riesling developmental stages", https://doi.org/10.15454/GYSGNR, Portail Data INRAE, V1, UNF:6:kNx5sQl91wFK0qFXwyZe3A== [fileUNF]
Budbreak, flowering and véraison dates for the grapevine variety Riesling were recorded since 1958 at the same location: the INRA experimental vineyard in Bergheim (Haut-rhin, France). It includes data from several experiments including RIxGW section I (https://urgi.versailles.in...
Apr 6, 2021 - Portail Data INRAE
Plaza Onate, Florian; Pons, Nicolas; Gauthier, Franck; Almeida, Mathieu; Ehrlich, Stanislav Dusko; Le Chatelier, Emmanuelle, 2021, "Updated Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota", https://doi.org/10.15454/FLANUP, Portail Data INRAE, V1, UNF:6:FWhI4eW+F6Bx/iR6cF7tcA== [fileUNF]
Updated Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota built by binning co-abundant genes of the IGC2 catalog with MSPminer. MSPs were used to estimate species abundance and perform functional analysis in the Human Gut Microbiome Atlas For more in...
Jun 30, 2020 - Portail Data INRAE
Bouffartigue, Cathy; Sandrine Debille; Ana Maria Ramos Cabrer; Olivier Fabreguettes; Santiago Pereira-Lorenzo; Timothée Flutre; Luc Harvengt, 2020, "Two main genetic clusters with high admixture between forest and cultivated chestnut (Castanea sativa Mill.) in France", https://doi.org/10.15454/E2DFNJ, Portail Data INRAE, V1, UNF:6:0lpmASDvoFi+pHtRkZQiEw== [fileUNF]
To ensure methodological reproducibility the datasets used in "Two main genetic clusters with high admixture between forest and cultivated chestnut (Castanea sativa Mill.) in France", Rmd and bash files used to perform all analyses used in the article, are stored here. Please sta...
Oct 1, 2018 - Biogeco Dataverse
Caignard, Thomas; Kremer, Antoine, 2018, "TREEPEACE: Heritability and genetic architecture of reproduction-related traits in a temperate oak species", https://doi.org/10.15454/PGKKTK, Portail Data INRAE, V1, UNF:6:jSMwkS9b86gQdDfMCdgKsA== [fileUNF]
The dataset contains data characterizing the reproduction of 342 trees monitored during four years, from 2014 to 2017, within a full-sib family of pedunculated oak (Quercus robur) situated at the experimental unit of Bourran, France. Trees were planted within a randomized incompl...
Apr 13, 2018 - Biogeco Dataverse
Lesur Kupin, Isabelle, 2018, "TREEPEACE: Development of target sequence capture and estimation of genomic relatedness in a mixed oak stand", https://doi.org/10.15454/OMO2JC, Portail Data INRAE, V1
Le jeu de données est constitué de 191,281 SNPs identifiés dans 297 arbres (mélange de Q. robur et Q. petraea) situés dans la forêt de La Petite Charnie. Ces SNPs ont été détectés sur le génome de référence du chêne 3P, obtenu dans le cadre du projet ANR Genoak et hébergé par l'U...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the M. incognita genome", https://doi.org/10.15454/EPTDOS, Portail Data INRAE, V3
This datasets contains all the essential files produced during the TE prediction, annotation, and post-processing in the M. incognita genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET c...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the C. elegans genome", https://doi.org/10.15454/LQCIW0, Portail Data INRAE, V2
This datasets contains all the essential files produced during the TE prediction, annotation, and post-processing in the C. elegans genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET con...
Oct 19, 2018 - URGI Plant and Fungi Dataverse
URGI, 2018, "Transposable element annotation of Botrytis cinerea B05.10", https://doi.org/10.15454/TFYH9N, Portail Data INRAE, V1
The TEdenovo was launched on Botrytis cinerea strain B05.10 whole genome (18 chromosomes, NCBI bioProject PRJNA264284, assembly ASM83294v1). The TE Consensus library from the TEdenovo (36 consensus) was filtered out for consensus sequences classified as SSR, or noCat built from l...
Oct 4, 2018 - URGI Plant and Fungi Dataverse
Quesneville, Hadi, 2018, "Transposable element annotation of Arabidopsis lyrata subsp. lyrata", https://doi.org/10.15454/INYUVZ, Portail Data INRAE, V1
After running the TEdenovo, we got a filtered library (without the SSR consensus and without the unclassified consensus if they were generated with less than 10 HSPs). We have clustered this library and the cluster number is in the header of each consensus. After a first TEannot...
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