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1 to 10 of 41 Results
Apr 6, 2021 - Portail Data INRAE
Plaza Onate, Florian; Pons, Nicolas; Gauthier, Franck; Almeida, Mathieu; Ehrlich, Stanislav Dusko; Le Chatelier, Emmanuelle, 2021, "Updated Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota", https://doi.org/10.15454/FLANUP, Portail Data INRAE, V1, UNF:6:FWhI4eW+F6Bx/iR6cF7tcA== [fileUNF]
Updated Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota built by binning co-abundant genes of the IGC2 catalog with MSPminer. MSPs were used to estimate species abundance and perform functional analysis in the Human Gut Microbiome Atlas For more in...
Jan 21, 2021
Rué, Olivier, 2021, "Test dataset for assessment FROGS ITS methodology", https://doi.org/10.15454/AOT7UL, Portail Data INRAE, V1
Our objective was to create datasets allowing, among other things, to test methods and tools to process data from Fungi metabarcoding sequencing. Consequently, we have computer-generated reads of 250 nucleotides in length from artificial PCRs produced with the Grinder software on...
Jan 22, 2021
Rué, Olivier, 2021, "Test dataset for assessment FROGS 16S amplicon methodology", https://doi.org/10.15454/VGVCIJ, Portail Data INRAE, V1
Grinder (v.0.5.3) (Angly, et al., 2012) was used to simulate the PCR amplification of fulllength (V3V4 and V4) sequences from reference databases. We generated 25 sets of species manually extracted from UTAX (Simulated Data From UTAX = SDFU) and 25 others from SILVA (v123) databa...
May 25, 2021 - URGI Plant and Fungi Dataverse
Ducatillion, Catherine; Lamant, Thierry; Bellanger, Richard; Bouttier, Valentin; Bastien, Jean-Charles; Michotey, Celia; Gautier, Laurent; Fady, Bruno; Musch, Brigitte, 2021, "Survival and growth of 711 forest tree taxa in eight French arboretums from three different climate regions", https://doi.org/10.15454/RGMM07, Portail Data INRAE, V1, UNF:6:lBKwa7PQ98fZg5+qoF1TDg== [fileUNF]
Abstract The dataset is checklist of 711 native and exotic forest tree taxa (species, subspecies and arieties) from 177 genera worldwide, their survival and growth in eight French arboretums from three contrasted bioclimates. Planted between 1969 and 1976, 338 taxa have survived...
SunfloDry(INRA - Institut National de la Recherche Agronomique)
Jan 11, 2021PMB Metabolomics
Leaf metabolomic responses of sunflower lines and hybrids to water deficit
Feb 9, 2021
Vacher, Corinne, 2021, "Statistical analysis scripts to analyze metabarcoding data of fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvignon’)", https://doi.org/10.15454/PL3HWQ, Portail Data INRAE, V1
This archive provides the statistical analysis scripts used to analyze a metabarcoding dataset (available at https://www.ncbi.nlm.nih.gov/bioproject/678415) representing foliar fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvi...
Jan 5, 2021 - URGI Plant and Fungi Dataverse
Pont, Caroline; Flores, Raphaël-Gauthier; Salse, Jérôme, 2021, "PlantSyntenyViewer Wheat dataset submission file", https://doi.org/10.15454/KWWCGV, Portail Data INRAE, V1
Submission file of Wheat dataset in PlantSyntenyViewer
Jan 5, 2021 - URGI Plant and Fungi Dataverse
Huneau, Cécile; Flores, Raphaël-Gauthier; Salse, Jérôme, 2021, "PlantSyntenyViewer Solanaceae submission file", https://doi.org/10.15454/TRBVMD, Portail Data INRAE, V1
Submission file of Solanaceae botanic family (17 proto-chromosomes) in PlantSyntenyViewer
Jan 5, 2021 - URGI Plant and Fungi Dataverse
Huneau, Cécile; Flores, Raphaël-Gauthier; Salse, Jérôme, 2021, "PlantSyntenyViewer Rosaceae submission file", https://doi.org/10.15454/GUJBZB, Portail Data INRAE, V1
Submission file of Rosaceae botanic family (9 proto-chromosomes) in PlantSyntenyViewer
Jan 5, 2021 - URGI Plant and Fungi Dataverse
Huneau, Cécile; Flores, Raphaël-Gauthier; Salse, Jérôme, 2021, "PlantSyntenyViewer Legumes submission file", https://doi.org/10.15454/J9RN5S, Portail Data INRAE, V1
Submission file of Legumes botanic family (16 proto-chromosomes) in PlantSyntenyViewer
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