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1 to 10 of 11 Results
Jul 30, 2021 - URGI Plant and Fungi Dataverse
Florian Maumus, 2021, "Clustered IMG VR v3 file: IMGVR70", https://doi.org/10.15454/RZDFOR, Portail Data INRAE, V1
How this file was created? All proteins (n=66,585,678) were retrieved from IMG/VR v3 database (https://genome.jgi.doe.gov/portal/IMG_VR/IMG_VR.home.html) version IMG_VR_2020-10-12_5.1 (https://doi.org/10.1093/nar/gkaa946). We used MMseqs2 (https://doi.org/10.1038/nbt.3988) for si...
Jul 28, 2021
Vacher, Corinne, 2021, "Statistical analysis scripts to analyze metabarcoding data of fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvignon’)", https://doi.org/10.15454/PL3HWQ, Portail Data INRAE, V2
This archive provides the statistical analysis scripts used to analyze a metabarcoding dataset (available at https://www.ncbi.nlm.nih.gov/bioproject/678415) representing foliar fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvi...
Jul 9, 2021 - URGI Plant and Fungi Dataverse
Jonathan Kreplak; Grégoire Aubert; Magalie Leveugle; Hervé Duborjal; Jean-Philippe Pichon; Judith Burstin, 2021, "Exome capture genotyping data on the pea Architecture Multi-Stress collection (Peamust project)", https://doi.org/10.15454/3QRIPA, Portail Data INRAE, V1
In the context of Work Package 3 of the PeaMUST project , Genotyping data obtained by exome capture on a 240 accessions pea germplasm panel (AMS collection). You need an account to access data, contact urgi-support@inrae.fr and ask for Peamust project Exome capture genotyping dat...
May 26, 2021
Joanna Roginska; Michel Perdicakis; Cédric Midoux; Théodore Bouchez; Christelle Despas; Liang Liu; Jiang-Hao Tian; Cédric Chaumont; Frédéric P. A. Jorand; Julien Tournebize; Mathieu Etienne, 2021, "Electrochemical analysis of a microbial electrochemical snorkel in laboratory and constructed wetlands - biom file", https://doi.org/10.15454/KC3WAO, Portail Data INRAE, V1
biom file
Apr 23, 2021 - Portail Data INRAE
Plaza Onate, Florian; Ghozlane, Amine; Almeida, Mathieu, 2021, "An updated catalog of genes and species of the pig gut microbiota", https://doi.org/10.15454/OPAULL, Portail Data INRAE, V1, UNF:6:Ggdc9+Ypa5HI+KYp/YYwqw== [fileUNF]
Dataset overview We built an updated catalog of 9.3M genes found in the pig gut microbiota. Co-abundant genes were binned in 1523 Metagenomic Species Pan-genomes (MSPs) for which we provide taxonomic labels and a phylogenetic tree. In addition, we reconstituted 7059 Metagenome-As...
Jan 22, 2021
Rué, Olivier, 2021, "Test dataset for assessment FROGS 16S amplicon methodology", https://doi.org/10.15454/VGVCIJ, Portail Data INRAE, V1
Grinder (v.0.5.3) (Angly, et al., 2012) was used to simulate the PCR amplification of fulllength (V3V4 and V4) sequences from reference databases. We generated 25 sets of species manually extracted from UTAX (Simulated Data From UTAX = SDFU) and 25 others from SILVA (v123) databa...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Pirsicila; Togawa, Roberto, 2020, "PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle", https://doi.org/10.15454/WBZZ5M, Portail Data INRAE, V1, UNF:6:Q6V0cPfaBNCHOg5KABL/1g== [fileUNF]
Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit over than in other PPN against the NCBI's nr. - the protein does not belong to a multigene family - the co...
Aug 5, 2020 - Portail Data INRAE
INRAE, 2020, "Oak Genome Sequencing Website", https://doi.org/10.15454/WSMRIN, Portail Data INRAE, V2
The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource by INRAE, available at http://www.oakgenome.fr/. It provides access to various resources : oak genome b...
Jul 24, 2020 - SPOmics
Monachello, Dario; Lurin,Claire; Vert, Gregory, 2020, "InterATOME protein-protein interactions from Vert, Gregory (Lysine-63 Polyubiquitin Networks)", https://doi.org/10.15454/ZKPXKS, Portail Data INRAE, V2
This dataset provides the results of two systematic large-scale yeast two-hybrid screenings of the Arabidopsis thaliana InterATOME library with the Arabidopsis Ubiquitin-conjugating enzymes-E2s (UBC35/36-UEV1A/B/C/D) and their –interacting Ub-ligases E3s.
Feb 10, 2020 - URGI Plant and Fungi Dataverse
Guillaumie, Sabine; Decroocq, Stéphane; Ollat, Nathalie; Delrot, Serge; Gomès, Eric; Cookson, Sarah, 2020, "Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators", https://doi.org/10.15454/4ZUPCP, Portail Data INRAE, V1
A F2 population consisting of 337 individuals was derived from the inter-specific cross of V. vinifera cv. Cabernet-Sauvignon (CS) x V. riparia cv. Riparia Gloire de Montpellier (RGM). This population, named CS x RGM_F2, resulted from the self-fertilization of the F1_148 individu...
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