Skip to main content
Omics Dataverse (www.inrae.fr)
Featured Dataverses

In order to use this feature you must have at least one published dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

Find
Advanced Search

1 to 10 of 53 Results
Apr 23, 2021 - Portail Data INRAE
Plaza Onate, Florian; Ghozlane, Amine; Almeida, Mathieu, 2021, "An updated catalog of genes and species of the pig gut microbiota", https://doi.org/10.15454/OPAULL, Portail Data INRAE, V1, UNF:6:Ggdc9+Ypa5HI+KYp/YYwqw== [fileUNF]
Dataset overview We built an updated catalog of 9.3M genes found in the pig gut microbiota. Co-abundant genes were binned in 1523 Metagenomic Species Pan-genomes (MSPs) for which we provide taxonomic labels and a phylogenetic tree. In addition, we reconstituted 7059 Metagenome-As...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa; Da Rocha, Martine; Danchin, Eienne, 2020, "TE-related genes: annotation, characterisation, and expression.", https://doi.org/10.15454/DLDJVF, Portail Data INRAE, V2, UNF:6:eKPs0JUt+cT1C/bqgPBVjg== [fileUNF]
This dataset contains the gene analysis workflow used to evaluate the genes expression and to find the genes potentially involved in the TEs transposition machinery. Also, it contains the gene annotation file (bed format), the proteome stem from (https://doi.org/10.1371/journal.p...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "TE polymorphisms detection and analysis", https://doi.org/10.15454/EWJCT8, Portail Data INRAE, V3, UNF:6:E+xGPf2dIik9HjdvU3Bv3A== [fileUNF]
This dataset contains i) output files from "Kozlowski D. 2020a. Transposable Elements prediction and annotation in the M. incognita genome. Portail Data INRAE [Internet]. Available from: https://doi.org/10.15454/EPTDOS", "Kozlowski D. 2020b. Transposable Elements prediction and a...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the M. incognita genome", https://doi.org/10.15454/EPTDOS, Portail Data INRAE, V3
This datasets contains all the essential files produced during the TE prediction, annotation, and post-processing in the M. incognita genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET c...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the C. elegans genome", https://doi.org/10.15454/LQCIW0, Portail Data INRAE, V2
This datasets contains all the essential files produced during the TE prediction, annotation, and post-processing in the C. elegans genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET con...
Mar 9, 2021 - Portail Data INRAE
Larue, Clement, 2021, "Development of SNP markers for the identification of chestnut species, hybrids and varieties", https://doi.org/10.15454/XEMDLD, Portail Data INRAE, V2, UNF:6:eJQwJJ12X/74swiSKl9V2A== [fileUNF]
Three chestnut species (Castanea sativa, Castanea crenata and Castanea mollissima) and their hybrids have been massively planted worldwide for nut production. To better study and manage these trees, we identified nuclear single nucleotide polymorphism (SNP) markers using restrict...
Feb 16, 2021 - URGI Plant and Fungi Dataverse
Michotey, Celia, 2021, "Plant Bioinformatics Facility data management plan", https://doi.org/10.15454/9HM5UI, Portail Data INRAE, V1
Data management plan of the Plant Bioinformatics Facility, hosted at URGI. Copyrights The creator(s) of this plan accept(s) that all or part of the text may be reused and personalized if necessary for another plan. You can cite this plan’s DOI as the source, but the use of any up...
Feb 9, 2021
Vacher, Corinne, 2021, "Statistical analysis scripts to analyze metabarcoding data of fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvignon’)", https://doi.org/10.15454/PL3HWQ, Portail Data INRAE, V1
This archive provides the statistical analysis scripts used to analyze a metabarcoding dataset (available at https://www.ncbi.nlm.nih.gov/bioproject/678415) representing foliar fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvi...
Jan 15, 2021 - Portail Data INRAE
Castagneyrol, Bastien; van Halder, Inge; Kadiri, Yasmine; Schillé, Laura; Jactel, Hervé, 2020, "Raw data for the paper "Host-mediated, cross-generational intraspecific competition in a herbivore species"", https://doi.org/10.15454/KMUX39, Portail Data INRAE, V3, UNF:6:t1nSuO9c2LkYU+KuXXPn/Q== [fileUNF]
The file contains raw data used in the paper "Host-mediated, cross-generational intraspecific competition in a herbivore species". `x` and `y` are the position of each box tree in the green house; `Treatment` is the prior herbivory treatment; `Clutch.number` is the total number o...
Jan 13, 2021 - Metabarcoding
Frigerio, Jean-Marc; Caron, Henri; Sabatier, Daniel; Molino, Jean-François; Franc, Alain, 2021, "Guiana Trees", https://doi.org/10.15454/XSJ079, Portail Data INRAE, V1
Contains information which has been built for comparing molecular diversity and botanical classification of about 1500 trees in French Guiana. Contains - a fasta file of sequences - a character file with taxonomy per sequence - a distance file of pairwise SW distances between seq...
Add Data

Sign up or log in to create a dataverse or add a dataset.

Share Dataverse

Share this dataverse on your favorite social media networks.

Link Dataverse
Reset Modifications

Are you sure you want to reset the selected metadata fields? If you do this, any customizations (hidden, required, optional) you have done will no longer appear.

Contact Portail Data INRAE Support

Portail Data INRAE Support

Please fill this out to prove you are not a robot.

+ =