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1 to 10 of 84 Results
Jun 7, 2021 - Bordeaux Metabolome
Jacob, Daniel, 2020, "ODAM Virtual Disk Image (VDI) for Oracle VM VirtualBox - Zipped with 7zip.", https://doi.org/10.15454/C9LAEF, Portail Data INRAE, V4
ODAM (Open Data for Access and Mining) is an Experiment Data Table Management System (EDTMS) that implements a simple way to make research data broadly accessible and fully available for reuse, including by script languages such as R and Python. The main purpose is to make a data...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa; Da Rocha, Martine; Danchin, Eienne, 2020, "TE-related genes: annotation, characterisation, and expression.", https://doi.org/10.15454/DLDJVF, Portail Data INRAE, V2, UNF:6:eKPs0JUt+cT1C/bqgPBVjg== [fileUNF]
This dataset contains the gene analysis workflow used to evaluate the genes expression and to find the genes potentially involved in the TEs transposition machinery. Also, it contains the gene annotation file (bed format), the proteome stem from (https://doi.org/10.1371/journal.p...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "TE polymorphisms detection and analysis", https://doi.org/10.15454/EWJCT8, Portail Data INRAE, V3, UNF:6:E+xGPf2dIik9HjdvU3Bv3A== [fileUNF]
This dataset contains i) output files from "Kozlowski D. 2020a. Transposable Elements prediction and annotation in the M. incognita genome. Portail Data INRAE [Internet]. Available from: https://doi.org/10.15454/EPTDOS", "Kozlowski D. 2020b. Transposable Elements prediction and a...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the M. incognita genome", https://doi.org/10.15454/EPTDOS, Portail Data INRAE, V3
This datasets contains all the essential files produced during the TE prediction, annotation, and post-processing in the M. incognita genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET c...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the C. elegans genome", https://doi.org/10.15454/LQCIW0, Portail Data INRAE, V2
This datasets contains all the essential files produced during the TE prediction, annotation, and post-processing in the C. elegans genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET con...
Jan 15, 2021 - Portail Data INRAE
Castagneyrol, Bastien; van Halder, Inge; Kadiri, Yasmine; Schillé, Laura; Jactel, Hervé, 2020, "Raw data for the paper "Host-mediated, cross-generational intraspecific competition in a herbivore species"", https://doi.org/10.15454/KMUX39, Portail Data INRAE, V3, UNF:6:t1nSuO9c2LkYU+KuXXPn/Q== [fileUNF]
The file contains raw data used in the paper "Host-mediated, cross-generational intraspecific competition in a herbivore species". `x` and `y` are the position of each box tree in the green house; `Treatment` is the prior herbivory treatment; `Clutch.number` is the total number o...
Jan 12, 2021 - Bordeaux Metabolome
Urrutia, Maria; Deborde, Catherine; Maucourt, Mickaël; Jacob, Daniel; Moing, Annick, 2020, "NMR metabolomic analyses of young leaf of maize plants cultivated in a growth-chamber", https://doi.org/10.15454/F2CZ1R, Portail Data INRAE, V2, UNF:6:JLr9hp6WBch6p26RVNsGNA== [fileUNF]
NMR metabolomic analyses of young leaf of maize plants cultivated in a growth-chamber. Analyses performed on 18 genetically-diverse hybrids using proton-NMR of leaf extracts.
Jan 8, 2021 - Metabolomic responses of maize leaf to progressive controlled chilling
Urrutia, Maria; Bernillon, Stéphane; Moing, Annick, 2020, "LC-MS metabolomic analyses of maize young leaf cultivated in a growth chamber", https://doi.org/10.15454/J9KO72, Portail Data INRAE, V2, UNF:6:HTEu5gdg6G3uO2MDAMHGWQ== [fileUNF]
Analyses performed on 18 genetically-diverse hybrids using leaf methanolic extracts.
Dec 21, 2020 - Portail Data INRAE
Plaza Oñate, Florian; Le Chatelier, Emmanuelle, 2020, "Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota", https://doi.org/10.15454/QVCYRB, Portail Data INRAE, V1, UNF:6:SHslgNFGrMNfkIbfGdqHpw== [fileUNF]
Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota built by binning co-abundant genes of the IGC catalog with MSPminer. This dataset is the same as the one published with the original paper except we updated the taxonomic annotation and phylogeny.
Dec 9, 2020 - Biogeco Dataverse
Alexandre, Hermine; Truffaut, Laura; Klein, Etienne; Ducousso, Alexis; Chancerel, Emilie; Lesur, Isabelle; Dencausse, Benjamin; Louvet, Jean-Marc; Nepveu, Gérard; Torres-Ruiz, José M.; Lagane, Frédéric; Musch, Brigitte; Delzon, Sylvain; Kremer, Antoine, 2020, "Long term monitoring of evolutionary changes in oak stands", https://doi.org/10.15454/XL23BS, Portail Data INRAE, V1, UNF:6:9upGid54ouhcG7oBqApC8Q== [fileUNF]
This dataset is composed of 4 files : The file EcologyG1&G2 provides ecological data assessed on the level of each tree (G1 and G2) and derived from a floristic survey. Details about the assessments of the ecological data are provided in Truffaut et al (2017, Article p. 127 and S...
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