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1 to 10 of 105 Results
application/pdf - 1.0 MB - MD5: 1a11142041623c0364c90acae645ae78
This file contains the outline of the files organization and content. It describes the different measurement scales available: Weather and soil water data at daily time step (1). Phenotypic data at the plot level in each experiment (2a) and at the genotypic level in each experime...
application/pdf - 318.9 KB - MD5: 8da6cbff1dc1ec625e1d4ecfe8809e91
This file contains the outline of the organization and contents of the files. It describes the different measurement scales available: Phenotypic data at the plot level in each field experiment (1a) and at the genotypic level in each field experiment and for both field experime...
text/tab-separated-values - 88.7 KB - MD5: 6eddc34c0d9b2a6bae21a0d5089d2932
This file contains the raw phenotypic data per experiment in each field experiment (respectively 2015 and 2016, in Saint Martin de Hynx INRA experimental station, 43°N, 553 1.3°W, France): one value per individual plot, and outliers have been removed. It contains six columns of i...
text/tab-separated-values - 1.1 MB - MD5: c16e96530b78b52914132ac45e93c570
This file contains the environmental indices. An environmental index is calculated as the average or the sum of one environmental variable over a genotype-specific phenological phase. The environmental variables used to calculate these indices can be found in the file «1-Env_vari...
text/tab-separated-values - 40.3 MB - MD5: 4bc959b9571abdab7b789e0291fb3402
Fluorescence Intensity Ratios for 32,788 SNPs on 20 samples corresponding to 10 duplicated landraces. This table has 5 columns with headers as follows: "SNP.Name","Sample.name","X","Y", "RatioObs". These columns correspond to name of SNP, name of sample, fluorescence in...
text/tab-separated-values - 144.8 KB - MD5: e87b56947f0aa895b7dc2dfaa0266c5e
This file contains the raw phenotypes data per experiment (year) in the platform: one value per individual plant. It contains seven columns for identifying the experiment, the genotypes and metadata: in «Experiment», experiments are described by the platform name (Phenoarch) foll...
text/x-r-source - 6.0 KB - MD5: 90e666cd6d8619a15288e93046d9b58b
- R scripts (Pipeline) that apply R functions (04_Function_PredAllFreqInDNABulk_Publi.R) to two training datasets corresponding to fluorescence intensity data of 327 lines (1_Train_set_327lines_32788SNP.tsv ) and two series of controlled pools (2_Train_set_24pools_TF_1000SNP.tab)...
text/tab-separated-values - 19.6 MB - MD5: bd39777b1e0188ba276fac46bbd81652
This file contains the 50K genotyping Matrix tabulated coded in allelic dose (012) filtered and imputed. Genotyping of 41,722 loci on 246 parental lines were obtained using 50K Illumina Infinium HD arrays (Ganal et al., 2011). Genotype were coded in allelic dose with 0 for the mi...
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