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1 to 10 of 111 Results

GenotypesSNP_G1_G2.tab Dec 9, 2020 - Long term monitoring of evolutionary changes in oak stands text/tab-separated-values - 1.8 MB - MD5: 5741fda1997fc7fe45b01c2c6b57feb5
3_FIR_10DuplicatedLandraces_32788SNPs.tab Dec 8, 2020 - Fluorescence intensity datasets and R scripts to predict allelic frequencies in DNA bulks using maize 50K Illumina array text/tab-separated-values - 40.3 MB - MD5: 4bc959b9571abdab7b789e0291fb3402 Fluorescence Intensity Ratios for 32,788 SNPs on 20 samples corresponding to 10 duplicated landraces. This table has 5 columns with headers as follows: "SNP.Name","Sample.name","X","Y", "RatioObs". These columns correspond to name of SNP, name of sample, fluorescence in...
5_PipelinePredictionDNABulk_MethPubli_inrae.R Dec 8, 2020 - Fluorescence intensity datasets and R scripts to predict allelic frequencies in DNA bulks using maize 50K Illumina array text/x-r-source - 6.0 KB - MD5: 90e666cd6d8619a15288e93046d9b58b - R scripts (Pipeline) that apply R functions (04_Function_PredAllFreqInDNABulk_Publi.R) to two training datasets corresponding to fluorescence intensity data of 327 lines (1_Train_set_327lines_32788SNP.tsv ) and two series of controlled pools (2_Train_set_24pools_TF_1000SNP.tab)...
MiV3-SP-MERCI-noTM.acc Aug 18, 2020 - M. incognita candidate effector proteins application/vnd.americandynamics.acc - 37.7 KB - MD5: 05584d795f41f6e26c142c6e87d3a9ed Proteins with SP, noTM and a MERCI effector motif
HGT-summary-portal.tab Aug 18, 2020 - Horizontal gene transfer candidates in M. incognita text/tab-separated-values - 197.2 KB - MD5: 648b8aade271b14125975b9f78709bd2 Summary of HGT candidates and functional annotation. Sheet1: Possible HGT (AI>0). Sheet2: Likely HGT (AI>14). For these, AI and HGT scores are given as well as representative Interpro domain, orthogroup and whether this is a previously reported HGT case. Sheet3: Known HGT in root...
Minc3s00026.Tif Jul 3, 2020 - Experimental validations of TE-impacted coding or regulatory loci image/tiff - 2.1 MB - MD5: bb73b1a6ae32f2deec4af523faccd624 original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00026' in 12 isolates of M. incognita.
Minc3s00450_30_01_2020.Tif Jul 3, 2020 - Experimental validations of TE-impacted coding or regulatory loci image/tiff - 2.1 MB - MD5: 04a7eaae5de46d1e9746ac70b19f5b92 original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00450' in 12 isolates of M. incognita.
Minc3s00751_31_01_2020.Tif Jul 3, 2020 - Experimental validations of TE-impacted coding or regulatory loci image/tiff - 2.1 MB - MD5: 38102ec9205c7043b0fe4ffc47b1e468 original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00751' in 12 isolates of M. incognita.
Minc3s00909-2.Tif Jul 3, 2020 - Experimental validations of TE-impacted coding or regulatory loci image/tiff - 2.1 MB - MD5: 385a3c1fcbee6ab8d5b7d046e40fa41e original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00909' in 12 isolates of M. incognita.
Minc3s01138_31_01_2020.Tif Jul 3, 2020 - Experimental validations of TE-impacted coding or regulatory loci image/tiff - 2.1 MB - MD5: 5415ea76dee8e54398a07e54e23091b0 original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s01138' in 12 isolates of M. incognita.

GenotypesSNP_G1_G2.tab

Dec 9, 2020 - Long term monitoring of evolutionary changes in oak stands

text/tab-separated-values - 1.8 MB - MD5: 5741fda1997fc7fe45b01c2c6b57feb5

3_FIR_10DuplicatedLandraces_32788SNPs.tab

Dec 8, 2020 - Fluorescence intensity datasets and R scripts to predict allelic frequencies in DNA bulks using maize 50K Illumina array

text/tab-separated-values - 40.3 MB - MD5: 4bc959b9571abdab7b789e0291fb3402

Fluorescence Intensity Ratios for 32,788 SNPs on 20 samples corresponding to 10 duplicated landraces. This table has 5 columns with headers as follows: "SNP.Name","Sample.name","X","Y", "RatioObs". These columns correspond to name of SNP, name of sample, fluorescence in...

5_PipelinePredictionDNABulk_MethPubli_inrae.R

Dec 8, 2020 - Fluorescence intensity datasets and R scripts to predict allelic frequencies in DNA bulks using maize 50K Illumina array

text/x-r-source - 6.0 KB - MD5: 90e666cd6d8619a15288e93046d9b58b

- R scripts (Pipeline) that apply R functions (04_Function_PredAllFreqInDNABulk_Publi.R) to two training datasets corresponding to fluorescence intensity data of 327 lines (1_Train_set_327lines_32788SNP.tsv ) and two series of controlled pools (2_Train_set_24pools_TF_1000SNP.tab)...

MiV3-SP-MERCI-noTM.acc

Aug 18, 2020 - M. incognita candidate effector proteins

application/vnd.americandynamics.acc - 37.7 KB - MD5: 05584d795f41f6e26c142c6e87d3a9ed

Proteins with SP, noTM and a MERCI effector motif

HGT-summary-portal.tab

Aug 18, 2020 - Horizontal gene transfer candidates in M. incognita

text/tab-separated-values - 197.2 KB - MD5: 648b8aade271b14125975b9f78709bd2

Summary of HGT candidates and functional annotation. Sheet1: Possible HGT (AI>0). Sheet2: Likely HGT (AI>14). For these, AI and HGT scores are given as well as representative Interpro domain, orthogroup and whether this is a previously reported HGT case. Sheet3: Known HGT in root...

Minc3s00026.Tif

Jul 3, 2020 - Experimental validations of TE-impacted coding or regulatory loci

image/tiff - 2.1 MB - MD5: bb73b1a6ae32f2deec4af523faccd624

original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00026' in 12 isolates of M. incognita.

Minc3s00450_30_01_2020.Tif

Jul 3, 2020 - Experimental validations of TE-impacted coding or regulatory loci

image/tiff - 2.1 MB - MD5: 04a7eaae5de46d1e9746ac70b19f5b92

original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00450' in 12 isolates of M. incognita.

Minc3s00751_31_01_2020.Tif

Jul 3, 2020 - Experimental validations of TE-impacted coding or regulatory loci

image/tiff - 2.1 MB - MD5: 38102ec9205c7043b0fe4ffc47b1e468

original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00751' in 12 isolates of M. incognita.

Minc3s00909-2.Tif

Jul 3, 2020 - Experimental validations of TE-impacted coding or regulatory loci

image/tiff - 2.1 MB - MD5: 385a3c1fcbee6ab8d5b7d046e40fa41e

original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00909' in 12 isolates of M. incognita.

Minc3s01138_31_01_2020.Tif

Jul 3, 2020 - Experimental validations of TE-impacted coding or regulatory loci

image/tiff - 2.1 MB - MD5: 5415ea76dee8e54398a07e54e23091b0

original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s01138' in 12 isolates of M. incognita.

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