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NLGenomeSweeper Sep 17, 2019 - EPGV Toda, Nicholas, 2019, "NLGenomeSweeper", https://doi.org/10.15454/DS6VIK, Portail Data INRAE, V1 NLGenomeSweeper is a command line bash pipeline that searches a genome for NBS-LRR (NLR) disease resistance genes based on the presence of the NB-ARC domain using the consensus sequence of the Pfam HMM profile (PF00931) and class specific consensus sequences built from Vitis vini...
Development of a new version of the grapevine reference genome assembly (12X.v2) based on genetic maps and paired-end sequences. Nov 23, 2018 - URGI Plant and Fungi Dataverse Canaguier, Aurélie; Le Paslier, Marie-Christine; Duchêne, Eric; Scalabrin, Simone; Di Gaspero, Gabriele; Mohellibi, Nacer; Choisne, Nathalie; Berard, Aurélie; Chauveau, Aurélie; Le Clainche, Isabelle; Bounon, Remy; Guichard, Cécile; Rustenholtz, Camille; Brunel, Dominique; Morgante, Michele; Quesneville, Hadi; Adam-Blondon, Anne-Françoise, 2018, "Development of a new version of the grapevine reference genome assembly (12X.v2) based on genetic maps and paired-end sequences.", https://doi.org/10.15454/1.4962347083032307E12, Portail Data INRAE, V3 Abstract:The dataset comprises (i) two excel files describing in details the SY x GR, CH x BI and the RI x GW genetic maps and the markers that were used to order and orient the scaffolds of the grapevine reference genome build (FN594950-FN597014, EMBL release 102; Vitis vinifera...
A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3) Nov 23, 2018 - URGI Plant and Fungi Dataverse Canaguier, Aurélie; Grimplet, Jérôme; Scalabrin, Simone; Di Gaspero, Gabriele; Mohellibi, Nacer; Choisne, Nathalie; Rombault, Stéphane; Rustenholtz, Camille; Morgante, Michele; Quesneville, Hadi; Adam-Blondon, Anne-Françoise, 2018, "A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)", https://doi.org/10.15454/1.5009072354498936E12, Portail Data INRAE, V3 Abstract:The dataset comprises 12X.v2 grapevine reference genome assembly and its VCost.v3 gene annotation in Genbank format. The 12X.v2 chromosome assembly is based on the scaffolds of the grapevine reference genome build (FN594950-FN597014, EMBL release 102; Vitis vinifera cv....

NLGenomeSweeper

Sep 17, 2019 - EPGV

Toda, Nicholas, 2019, "NLGenomeSweeper", https://doi.org/10.15454/DS6VIK, Portail Data INRAE, V1

NLGenomeSweeper is a command line bash pipeline that searches a genome for NBS-LRR (NLR) disease resistance genes based on the presence of the NB-ARC domain using the consensus sequence of the Pfam HMM profile (PF00931) and class specific consensus sequences built from Vitis vini...

Development of a new version of the grapevine reference genome assembly (12X.v2) based on genetic maps and paired-end sequences.

Nov 23, 2018 - URGI Plant and Fungi Dataverse

Canaguier, Aurélie; Le Paslier, Marie-Christine; Duchêne, Eric; Scalabrin, Simone; Di Gaspero, Gabriele; Mohellibi, Nacer; Choisne, Nathalie; Berard, Aurélie; Chauveau, Aurélie; Le Clainche, Isabelle; Bounon, Remy; Guichard, Cécile; Rustenholtz, Camille; Brunel, Dominique; Morgante, Michele; Quesneville, Hadi; Adam-Blondon, Anne-Françoise, 2018, "Development of a new version of the grapevine reference genome assembly (12X.v2) based on genetic maps and paired-end sequences.", https://doi.org/10.15454/1.4962347083032307E12, Portail Data INRAE, V3

Abstract:The dataset comprises (i) two excel files describing in details the SY x GR, CH x BI and the RI x GW genetic maps and the markers that were used to order and orient the scaffolds of the grapevine reference genome build (FN594950-FN597014, EMBL release 102; Vitis vinifera...

A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)

Nov 23, 2018 - URGI Plant and Fungi Dataverse

Canaguier, Aurélie; Grimplet, Jérôme; Scalabrin, Simone; Di Gaspero, Gabriele; Mohellibi, Nacer; Choisne, Nathalie; Rombault, Stéphane; Rustenholtz, Camille; Morgante, Michele; Quesneville, Hadi; Adam-Blondon, Anne-Françoise, 2018, "A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)", https://doi.org/10.15454/1.5009072354498936E12, Portail Data INRAE, V3

Abstract:The dataset comprises 12X.v2 grapevine reference genome assembly and its VCost.v3 gene annotation in Genbank format. The 12X.v2 chromosome assembly is based on the scaffolds of the grapevine reference genome build (FN594950-FN597014, EMBL release 102; Vitis vinifera cv....

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