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PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA Danchin, Etienne; Grynberg, Pirsicila; Togawa, Roberto, 2020, "PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle", https://doi.org/10.15454/WBZZ5M, Portail Data INRAE, V1, UNF:6:Q6V0cPfaBNCHOg5KABL/1g== [fileUNF] Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit over than in other PPN against the NCBI's nr. - the protein does not belong to a multigene family - the co...
Annotated list of species used in this study Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Annotated list of species used in this study", https://doi.org/10.15454/IIAQOW, Portail Data INRAE, V1 Annotated list of the 63 species used in the Orthofinder comparative analysis of nematodes (61 species) and two tardigrade species as out-groups. Description: Lines 1-64, definition of columns - Abbrev Species: abbreviated species name. Species identifiers used in all the Orthofi...
DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils. Aug 3, 2018 Pauvert, Charlie; Buée, Marc; Laval, Valérie; Edel-Hermann, Véronique; Fauchery, Laure; Gautier, Angélique; Lesur Kupin, Isabelle; Vallance, Jessica; Vacher, Corinne, 2018, "DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.", https://doi.org/10.15454/8CVWRR, Portail Data INRAE, V1 This sequence dataset (FASTQ format) was obtained by metabarcoding an artificial (mock) fungal community. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platform (v3 chemistry, 2x250 bp)...

PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle

Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA

Danchin, Etienne; Grynberg, Pirsicila; Togawa, Roberto, 2020, "PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle", https://doi.org/10.15454/WBZZ5M, Portail Data INRAE, V1, UNF:6:Q6V0cPfaBNCHOg5KABL/1g== [fileUNF]

Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit over than in other PPN against the NCBI's nr. - the protein does not belong to a multigene family - the co...

Annotated list of species used in this study

Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA

Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Annotated list of species used in this study", https://doi.org/10.15454/IIAQOW, Portail Data INRAE, V1

Annotated list of the 63 species used in the Orthofinder comparative analysis of nematodes (61 species) and two tardigrade species as out-groups. Description: Lines 1-64, definition of columns - Abbrev Species: abbreviated species name. Species identifiers used in all the Orthofi...

DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.

Aug 3, 2018

Pauvert, Charlie; Buée, Marc; Laval, Valérie; Edel-Hermann, Véronique; Fauchery, Laure; Gautier, Angélique; Lesur Kupin, Isabelle; Vallance, Jessica; Vacher, Corinne, 2018, "DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.", https://doi.org/10.15454/8CVWRR, Portail Data INRAE, V1

This sequence dataset (FASTQ format) was obtained by metabarcoding an artificial (mock) fungal community. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platform (v3 chemistry, 2x250 bp)...

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