Skip to main content
Omics Dataverse (www.inrae.fr)
Featured Dataverses

In order to use this feature you must have at least one published dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

Find
Advanced Search

There was an error with your search parameters. Please clear your search and try again.

1 to 10 of 7,141 Results
May 26, 2021
Joanna Roginska; Michel Perdicakis; Cédric Midoux; Théodore Bouchez; Christelle Despas; Liang Liu; Jiang-Hao Tian; Cédric Chaumont; Frédéric P. A. Jorand; Julien Tournebize; Mathieu Etienne, 2021, "Electrochemical analysis of a microbial electrochemical snorkel in laboratory and constructed wetlands - biom file", https://doi.org/10.15454/KC3WAO, Portail Data INRAE, V1
biom file
May 18, 2021 - URGI Plant and Fungi Dataverse
Michotey, Celia; Alizoti, Paraskevi; Aravanopoulos, Filippos A.; Bastias, Cristina C.; Benavides, Raquel; Carvalho, Bárbara; Cavers, Stephen; Dauphin, Benjamin; Fonti, Patrick; Gray, Alan; Grefen, Claudio; Gugerli, Felix; Heer, Katrin; Knutzen, Florian; López-Quiroga, David; Martínez-Sancho, Elisabet; Mas, Antonio; Morganti, Sandro; Myking, Tor; Opgenoorth, Lars; Rellstab, Christian; Slámová, Lenka; Valladares, Fernando; von Arx, Georg; Fady, Bruno, 2021, "Ecological and phenotypic trait dataset for 12 European forest tree species from H2020 project GenTree", https://doi.org/10.15454/DOWA7X, Portail Data INRAE, V1, UNF:6:YaEhkqcEubFJ28/9EeO/Hg== [fileUNF]
GenTree is a European Union project financed under the Horizon 2020 framework. The goal of GenTree was to improve the status and use of European in-situ and ex-situ forest genetic resource (FGR) collections, support acquisition, conservation, characterization, evaluation and use...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Pere, Arthur, 2021, "Enriched GO terms in the eight clusters of differentially expressed genes", https://doi.org/10.15454/V3SCRC, Portail Data INRAE, V1, UNF:6:zAVi7N8nqLznWAQu0l7wPg== [fileUNF]
Enriched gene ontology terms in each of the eight clusters of differentially-expressed M. incognita genes. For each cluster (A-H), enriched GO terms, as compared to the whole set of differentially expressed genes, were identified using a hypergeometric test as implemented in the...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Grynberg, Priscila, 2021, "Mapping of known effector genes on five Meloidogyne genomes", https://doi.org/10.15454/P5YIGX, Portail Data INRAE, V1
Based on the literature, we established a manually curated list of M. incognita genes specifically expressed in sub-ventral or dorsal secretory gland cells. We started from the list published in (Truong, Nguyen, Abad, Quentin, & Favery, 2015) and manually checked the figures asso...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Da Rocha, Martine; Eves-van den Akker, Sebastian; Bournaud, Caroline, 2021, "Genes differentially expressed across four life stages in M. incognita and GO enrichments", https://doi.org/10.15454/VLN8UC, Portail Data INRAE, V1, UNF:6:+u0fQZJ31YfvnCdRJnanQg== [fileUNF]
Meloidogyne incognita protein-coding genes differentially expressed at four stages during the parasitic life cycle: - eggs - pre-parasitic second stage juvenile (J2) - mix of parasitic second, third and fourth stage juveniles (J3) - adult females The genes show significantly diff...
text/tab-separated-values - 1.5 MB - MD5: 83dfe8893582ed999044e47f0dfcfd2b
Excel spreadsheet grouping the 6 tsv files and providing additional information on genes known to be specifically expressed in dorsal gland (DG) or subventral (SvG) gland cells.
text/tab-separated-values - 1.0 KB - MD5: 2c4b3de4b31b42237885a1d078b694e2
Excel file indicating presence / absence of SvG and DG effectors in the five Meloidofyne species and reconstruction of ancestral states with Mesquite.
Apr 23, 2021 - Portail Data INRAE
Plaza Onate, Florian; Ghozlane, Amine; Almeida, Mathieu, 2021, "An updated catalog of genes and species of the pig gut microbiota", https://doi.org/10.15454/OPAULL, Portail Data INRAE, V1, UNF:6:Ggdc9+Ypa5HI+KYp/YYwqw== [fileUNF]
Dataset overview We built an updated catalog of 9.3M genes found in the pig gut microbiota. Co-abundant genes were binned in 1523 Metagenomic Species Pan-genomes (MSPs) for which we provide taxonomic labels and a phylogenetic tree. In addition, we reconstituted 7059 Metagenome-As...
text/plain - 3.2 MB - MD5: 80cea844a986fd903a0dfe48a238af9f
data from a previously published life-stage specific RNA-seq analysis of M. incognita transcriptome during tomato plant infection (Blanc-Mathieu et al. 2017). This analysis encompassed four different life stages: (i) eggs, (ii) pre-parasitic second stage juveniles (J2), (iii)...
application/vnd.realvnc.bed - 785.1 KB - MD5: e0dbd7b0ee15f5e6358ca51d792c4992
M. incognita 'canonical' TE annotation from Kozlowski D. 2020a. Transposable Elements prediction and annotation in the M. incognita genome. Portail Data INRAE [Internet]. Available from: https://doi.org/10.15454/EPTDOS
Add Data

Sign up or log in to create a dataverse or add a dataset.

Share Dataverse

Share this dataverse on your favorite social media networks.

Link Dataverse
Reset Modifications

Are you sure you want to reset the selected metadata fields? If you do this, any customizations (hidden, required, optional) you have done will no longer appear.

Contact Portail Data INRAE Support

Portail Data INRAE Support

Please fill this out to prove you are not a robot.

+ =