Skip to main content
Omics Dataverse (www.inrae.fr)
Featured Dataverses

In order to use this feature you must have at least one published dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

Find Advanced Search

There was an error with your search parameters. Please clear your search and try again.

1 to 10 of 7,125 Results
Jan 13, 2021 - Metabarcoding
Frigerio, Jean-Marc; Caron, Henri; Sabatier, Daniel; Molino, Jean-François; Franc, Alain, 2021, "Guiana Trees", https://doi.org/10.15454/XSJ079, Portail Data INRAE, V1
Contains information which has been built for comparing molecular diversity and botanical classification of about 1500 trees in French Guiana. Contains - a fasta file of sequences - a character file with taxonomy per sequence - a distance file of pairwise SW distances between seq...
Dec 9, 2020 - Biogeco Dataverse
Alexandre, Hermine; Truffaut, Laura; Klein, Etienne; Ducousso, Alexis; Chancerel, Emilie; Lesur, Isabelle; Dencausse, Benjamin; Louvet, Jean-Marc; Nepveu, Gérard; Torres-Ruiz, José M.; Lagane, Frédéric; Musch, Brigitte; Delzon, Sylvain; Kremer, Antoine, 2020, "Long term monitoring of evolutionary changes in oak stands", https://doi.org/10.15454/XL23BS, Portail Data INRAE, V1, UNF:6:9upGid54ouhcG7oBqApC8Q== [fileUNF]
This dataset is composed of 4 files : The file EcologyG1&G2 provides ecological data assessed on the level of each tree (G1 and G2) and derived from a floristic survey. Details about the assessments of the ecological data are provided in Truffaut et al (2017, Article p. 127 and S...
text/tab-separated-values - 1.8 MB - MD5: 5741fda1997fc7fe45b01c2c6b57feb5
text/tab-separated-values - 40.3 MB - MD5: 4bc959b9571abdab7b789e0291fb3402
Fluorescence Intensity Ratios for 32,788 SNPs on 20 samples corresponding to 10 duplicated landraces. This table has 5 columns with headers as follows: "SNP.Name","Sample.name","X","Y", "RatioObs". These columns correspond to name of SNP, name of sample, fluorescence in...
text/x-r-source - 6.0 KB - MD5: 90e666cd6d8619a15288e93046d9b58b
- R scripts (Pipeline) that apply R functions (04_Function_PredAllFreqInDNABulk_Publi.R) to two training datasets corresponding to fluorescence intensity data of 327 lines (1_Train_set_327lines_32788SNP.tsv ) and two series of controlled pools (2_Train_set_24pools_TF_1000SNP.tab)...
Oct 14, 2020 - Biogeco Dataverse
Danjon, Frédéric; Saint Cast, Clément; Meredieu, Céline; Bert, Didier; Danquechin Dorval, Antoine; Issenhuth, Bernard; Lagane, Frédéric; Ségura, Raphaël, 2020, "Descriptive variables of 11,004 roots from 69 Pinus pinaster root systems excavated and digitized in 3D", https://doi.org/10.15454/K9DQPA, Portail Data INRAE, V1, UNF:6:FL0LCMy3RvT1EXOu6emvZg== [fileUNF]
This data set include 11004 roots from 69 coarse root systems of Pinus pinaster trees. These trees belong from the same local provenance of P. pinaster trees germinated in the field and grown in the same area (forest range of the “Landes de Gascogne” in Southwest France).These tr...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Pirsicila; Togawa, Roberto, 2020, "PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle", https://doi.org/10.15454/WBZZ5M, Portail Data INRAE, V1, UNF:6:Q6V0cPfaBNCHOg5KABL/1g== [fileUNF]
Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit over than in other PPN against the NCBI's nr. - the protein does not belong to a multigene family - the co...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Annotated list of species used in this study", https://doi.org/10.15454/IIAQOW, Portail Data INRAE, V1
Annotated list of the 63 species used in the Orthofinder comparative analysis of nematodes (61 species) and two tardigrade species as out-groups. Description: Lines 1-64, definition of columns - Abbrev Species: abbreviated species name. Species identifiers used in all the Orthofi...
application/vnd.americandynamics.acc - 37.7 KB - MD5: 05584d795f41f6e26c142c6e87d3a9ed
Proteins with SP, noTM and a MERCI effector motif
text/tab-separated-values - 197.2 KB - MD5: 648b8aade271b14125975b9f78709bd2
Summary of HGT candidates and functional annotation. Sheet1: Possible HGT (AI>0). Sheet2: Likely HGT (AI>14). For these, AI and HGT scores are given as well as representative Interpro domain, orthogroup and whether this is a previously reported HGT case. Sheet3: Known HGT in root...
Add Data

Sign up or log in to create a dataverse or add a dataset.

Share Dataverse

Share this dataverse on your favorite social media networks.

Link Dataverse
Reset Modifications

Are you sure you want to reset the selected metadata fields? If you do this, any customizations (hidden, required, optional) you have done will no longer appear.

Contact Portail Data INRAE Support

Portail Data INRAE Support

Please fill this out to prove you are not a robot.

+ =