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1 to 10 of 139 Results
text/tab-separated-values - 8.2 KB - MD5: 041e618feccb3b76421fa9a79268f9fe
Supplementary table with the results of the FUNC hypergeometric analysis listing the significantly enriched GO terms in the PPN specific genes and their clustering in different groups as represented in the bubble plots.
application/octet-stream - 120.4 MB - MD5: 1fa210e1bb53eb544a270b1e7f23401d
application/vnd.americandynamics.acc - 37.7 KB - MD5: 05584d795f41f6e26c142c6e87d3a9ed
Proteins with SP, noTM and a MERCI effector motif
text/tab-separated-values - 197.2 KB - MD5: 648b8aade271b14125975b9f78709bd2
Summary of HGT candidates and functional annotation. Sheet1: Possible HGT (AI>0). Sheet2: Likely HGT (AI>14). For these, AI and HGT scores are given as well as representative Interpro domain, orthogroup and whether this is a previously reported HGT case. Sheet3: Known HGT in root...
TIFF Image - 2.1 MB - MD5: bb73b1a6ae32f2deec4af523faccd624
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00026' in 12 isolates of M. incognita.
TIFF Image - 2.1 MB - MD5: 04a7eaae5de46d1e9746ac70b19f5b92
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00450' in 12 isolates of M. incognita.
TIFF Image - 2.1 MB - MD5: 38102ec9205c7043b0fe4ffc47b1e468
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00751' in 12 isolates of M. incognita.
TIFF Image - 2.1 MB - MD5: 385a3c1fcbee6ab8d5b7d046e40fa41e
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s00909' in 12 isolates of M. incognita.
TIFF Image - 2.1 MB - MD5: 5415ea76dee8e54398a07e54e23091b0
original result picture from the PCR experiment testing the insertion of a TE at the locus called 'Minc3s01138' in 12 isolates of M. incognita.
Python Source Code - 29.5 KB - MD5: a7a5d1e82e1ba7c3f5730ebd8ce5ea7a
In-house python (>= 3) script. Used to parse REPET draft annotation (repeatome) and isolate canonical TE annotations.Requires as input i) REPET draft TE-annotation output (.gff3), ii) the TE-consensus library used for the annotation, iii) the genome fasta file. Default parameters...
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