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31 to 40 of 103 Results
Feb 3, 2021
Vacher, Corinne, 2021, "Bioinformatic scripts to analyze metabarcoding data of fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvignon’)", https://doi.org/10.15454/KMAU1G, Portail Data INRAE, V1, UNF:6:O96E7S960CaSgbyN7MInuA== [fileUNF]
This archive provides the bioinformatic scripts used to analyze a metabarcoding dataset (available at https://www.ncbi.nlm.nih.gov/bioproject/678415) representing foliar fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvignon’)...
Feb 1, 2021 - Vocabulaires Ouverts
Duchêne, Eric, 2021, "Vitis Organ ontology", https://doi.org/10.15454/SBXYSV, Portail Data INRAE, V1
The file lists the terms that are recommended to be used to describe the different parts of a grapevine plant. It also contains cross references with other plant ontology databases. This thesaurus was established in the framework of the European COST 858 "Integrape" action. The m...
Feb 1, 2021
Ma, Yuxin, 2020, "Bioinformatic and statistical scripts to analyze the leaf-associated fungal community of wild plant populations", https://doi.org/10.15454/JQPBOW, Portail Data INRAE, V3
This dataset contains R-scripts to perform bioinformatic and statistical analysis on leaf-associated fungal communities of wild plant populations (Ma et al. Leaf-associated fungal and viral communities of wild plant populations differ between cultivated and natural ecosystems. Su...
Jan 27, 2021 - Experimental - Observation - Simulation Dataverse
Mistral, Pascale; Vanlerberghe-Masutti, Flavie; Elbelt, Sonia; Boissot, Nathalie, 2021, "Aphis gossypii/Aphis frangulae collected worldwide: Microsatellite markers data and genetic cluster assignment", https://doi.org/10.15454/HNGGMX, Portail Data INRAE, V1, UNF:6:1Pw9QXTzG/jc5P/fgSXuAQ== [fileUNF]
The dataset gathers information on 16016 individuals Aphis gossypii/Aphis frangulae collected in 17 countries from 1989 to 2019 from all continents. Aphids collected were either apterous (10177), winged (5654) or eggs (15). They were collected on 19 plant families or in traps dep...
Jan 25, 2021
Bortolami, Giovanni; Farolfi, Elena; Badel, Eric; Burlett, Regis; Cochard, Herve; Ferrer, Nathalie; King, Andrew; Lamarque, Laurent J.; Lecomte, pascal; Marchesseau-Marchal, Marie; Pouzoulet, Jerome; Torres-Ruiz, Jose M.; Trueba, Santiago; Delzon, Sylvain; Gambetta, Gregory A.; Delmas, Chloe E.L., 2021, "Raw data for the paper "Seasonal and long-term consequences of esca on grapevine stem xylem integrity"", https://doi.org/10.15454/U9KJEW, Portail Data INRAE, V1, UNF:6:KW/8V9BZC7Cm1vdlB67STQ== [fileUNF]
The files contain raw data used in the paper "Seasonal and long-term consequences of esca on grapevine stem xylem integrity". There are 4 datasets and 4 associated text files describing the variables. The "kskt_data.csv" dataset includes stem specific hydraulic conductivity (ks),...
Jan 13, 2021 - Dispositifs
Novak, Sandra, 2021, "OasYs_AF", https://doi.org/10.15454/SRBXQ9, Portail Data INRAE, V1
Ici sont rassemblées les descriptions des dispositifs agroforestiers de l’expérimentation système OasYs, mise en œuvre à l’Unité Expérimentale Fourrages, Ruminants et Environnement d’INRAE à Lusignan (UE FERLUS). Here are gathered the descriptions of agroforestry experimental plo...
Dec 7, 2020 - Omics Dataverse
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts for "Fort et al. 2020. Maternal effects shape seed fungal communities in Quercus petraea, New Phytologist"", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V3, UNF:6:+ROFl+GYxv+1vFHcrzj8MA== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al. 2020. Maternal effects shape seed fungal communities in Quercus petraea. New Phytologist, https://doi.org/10.1111/nph.17153). The bioinformatic script was applied to r...
Oct 19, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Grynberg, Priscila; Danchin, Etienne, 2020, "Gene Ontology enrichment in PPN-specific and horizontally acquired proteins", https://doi.org/10.15454/8NZABA, Portail Data INRAE, V3, UNF:6:yJukDnmw5qngLgeT3hhznw== [fileUNF]
We used a hypergeometric test within the FUNC program (Prüfer et al., 2007) to determine whether certain GO terms assigned via InterproScan annotation were significantly enriched in M. incognita : - PPN-specific proteins - PPN-specific putative secreted proteins (PSP) - PPN-speci...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Pirsicila; Togawa, Roberto, 2020, "PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle", https://doi.org/10.15454/WBZZ5M, Portail Data INRAE, V1, UNF:6:Q6V0cPfaBNCHOg5KABL/1g== [fileUNF]
Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit over than in other PPN against the NCBI's nr. - the protein does not belong to a multigene family - the co...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Orthofinder results: raw and annotated orthogroups and list of unassigned proteins", https://doi.org/10.15454/ZAYJBC, Portail Data INRAE, V1, UNF:6:8NY/0IDimU6RMU86NxPleg== [fileUNF]
Raw and annotated Orthofinder results on 61 nematode and 2 tardigrade (used as outgroup) species. The annotated list of species with description of the abbreviated names is available at https://doi.org/10.15454/IIAQOW Four files are provided and described below: 1- Orthogroups.Ge...
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