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1 to 6 of 6 Results
Jun 16, 2021
Plancade, Sandra, 2021, "A combined test for feature selection on sparse metaproteomics data - Scripts and data", https://doi.org/10.15454/ZSREJA, Portail Data INRAE, V1, UNF:6:s3xarg1knpBProC/fz0tYw== [fileUNF]
These scripts implement the combined test for feature selection in multi-class comparison from data with missing values, presented in Plancade, Berland et al (2021). The test combines a Fisher test for difference in terms of missingness between classes, and a t-test (for two clas...
May 25, 2021
Brault, Charlotte; Flutre, Timothée; Doligez, Agnès, 2021, "Scripts and data of the genetic analysis of Syrah x Grenache progeny", https://doi.org/10.15454/NOUQY2, Portail Data INRAE, V1, UNF:6:cPuUhPCLt7WlQDM7mknnWA== [fileUNF]
R-scripts and data associated with the publication "Harnessing multivariate, penalized regression methods for genomic prediction and QTL detection of drought-related traits in grapevine". Article abstract: Viticulture has to cope with climate change and decrease pesticide inputs,...
May 25, 2021
Brault, Charlotte; Flutre, Timothée; Launay, Amandine; Doligez, Agnès; Chouiki, Hajar; Sarah, Gautier; Mournet, Pierre, 2021, "Genotypic data and genetic map for Syrah x Grenache bi-parental grapevine population", https://doi.org/10.15454/QEDX2V, Portail Data INRAE, V1, UNF:6:L5hd7gugVIod43JkBypJvQ== [fileUNF]
This dataset, intended for QTL detection and genomic prediction, includes : 1) the SNP genotyping data, in vcf format, obtained by GBS in a grapevine bi-parental population, and the script for formatting the data before building the genetic map; 2) the script and custom R functio...
Dec 8, 2020 - ThaliaDB maize Dataverse
Nicolas, Stéphane; Madur, Delphine; Charcosset, Alain; Bauland, Cyril; Combes, Valérie; Berard, Aurélie; Arca, Mariangela; Mary-Huard, Tristan; Le Paslier, Marie-Christine; Gouesnard, Brigitte, 2020, "Fluorescence intensity datasets and R scripts to predict allelic frequencies in DNA bulks using maize 50K Illumina array", https://doi.org/10.15454/GANJ7J, Portail Data INRAE, V1, UNF:6:IvZiMGs4Oo8oWZqgBbcDdA== [fileUNF]
R scripts and fluorescence intensity datasets of 24 controlled pools and 327 inbred lines panels extracted from 50K Illumina Infinium HD array (Ganal et al., 2010). These datasets and R scripts can be used to calibrate a model to predict allelic frequencies in new DNA bulks using...
Dec 7, 2020 - Omics Dataverse
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts for "Fort et al. 2020. Maternal effects shape seed fungal communities in Quercus petraea, New Phytologist"", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V3, UNF:6:+ROFl+GYxv+1vFHcrzj8MA== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al. 2020. Maternal effects shape seed fungal communities in Quercus petraea. New Phytologist, https://doi.org/10.1111/nph.17153). The bioinformatic script was applied to r...
Feb 7, 2020 - ThaliaDB maize Dataverse
Rio Simon, 2020, "FlintDent GWAS dataset", https://doi.org/10.15454/OQT5CY, Portail Data INRAE, V1
This dataset corresponds to the data associated with the study: "Disentangling group specific QTL allele effects from genetic background epistasis in GWAS: an application to maize flowering" by Rio et al. (2019). The data includes genotypic and phenotypic information for a panel...
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