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1 to 10 of 24 Results
Jun 3, 2021 - Biogeco Dataverse
Ehrenmann, Francois, 2021, "Plan de Gestion de Données UMR BIOGECO",, Portail Data INRAE, V2
Plan de gestion des données de l'UMR INRAE BIOGECO Vous pouvez citer le DOI de ce plan comme source, mais l'utilisation de toute partie mise à jour de ce plan n'implique pas que le(s) créateur(s) soutienne(nt) ou ait(nt) un quelconque lien avec votre projet ou votre soumission. C...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Péré, Arthur; Eves-van den Akker, Sebastian; Bournaud, Caroline, 2021, "Enriched GO terms in predicted dorsal gland effectors",, Portail Data INRAE, V1, UNF:6:V3kqvCFEYcsZ8EHNP3r6Ow== [fileUNF]
By cross referencing the list of M. incognita proteins having a predicted signal peptide for secretion and no predicted transmembrane region with the list of proteins encoded by genes with Mel-DOG motifs in their upstream regions, we could predict 457 candidate dorsal gland (DG)...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne, 2021, "Ancestral reconstruction of the origin of M. incognita effectors in the Meloidogyne genus",, Portail Data INRAE, V1, UNF:6:K4noZaEQBBmM7ZCn8ESQNQ== [fileUNF]
Based on the mapping of non-redundant known M. incognita subventral (SvG) and dorsal (DG) gland effectors on the genomes of five Meloidogyne species ancestral numbers were deduced across their phylogeny using parsimony inference with Mesquite (Maddison & Maddison, 2014). In the g...
Mar 26, 2021
Monnet, Christophe, 2021, "Supplemental material - publication Irlinger and Monnet, 2021 - JDS",, Portail Data INRAE, V1, UNF:6:OKACxXd6i6ZlT+7Avg2crw== [fileUNF]
Supplemental table S1 (Proportion of bacterial or fungal operational taxonomic units (OTUs) in the samples (%)) and supplemental figure S1 (Alpha-diversity indices of bacterial communities during cheese-making and storage). Publication title: Temporal differences in microbial com...
Mar 19, 2021 - Vocabulaires Ouverts
DipSO, 2021, "Thésaurus INRAE",, Portail Data INRAE, V1
Thésaurus ouvert et partagé couvrant les domaines de recherche d’INRAE. Il sert de référentiel au sein de l’institut pour indexer et annoter des documents, pages web, descriptions d’activités, jeux de données, à des fins de recherche ou d’analyse de l’information. En savoir plus...
Jan 5, 2021
Corso, Massimiliano; Magniette, Marie-Laure; Delannoy, Etienne, 2021, "Untageted metabolomic analyses on seeds of six Camelina sativa varieties cultivated for five consecutive years - R Script",, Portail Data INRAE, V1
See, Portail Data INRAE, V1 for a full description of the experiment. Statistical analyses on untargeted metabolomic data Raw data were normalised on the internal standard (Apigenin) and weight of seeds used for the extraction. Normalised metabolit...
Oct 14, 2020
Paux, Etienne, 2020, "New insights into homoeologous copy number variations in the hexaploid wheat genome",, Portail Data INRAE, V1
Bread wheat is an allohexaploid species originating from two successive and recent rounds of hybridization between three diploid species that were very similar in terms of chromosome number, genome size, TE content, gene content and synteny. As a result, it has long been consider...
Aug 31, 2020
Laguerre, Sandrine, 2020, "MINTIA paper Simulated data",, Portail Data INRAE, V1
90 sets of reads associated to the 45 simulated fosmids used in MINTIA paper (extraction of 15 sets of sequence from 3 genomes x 2 sequencing machines)
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Pirsicila; Togawa, Roberto, 2020, "PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle",, Portail Data INRAE, V1, UNF:6:Q6V0cPfaBNCHOg5KABL/1g== [fileUNF]
Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit over than in other PPN against the NCBI's nr. - the protein does not belong to a multigene family - the co...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne, 2020, "M. incognita predicted secreted proteins",, Portail Data INRAE, V1
To identify putative secreted proteins in the M. incognita protein set (Blanc-Mathieu et al. 2017), we searched for predicted signal peptides (SP) for secretion using SignalP v4 (Petersen, Brunak, von Heijne, & Nielsen, 2011). This program improves the differentiation between tra...
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