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1 to 10 of 64 Results
May 18, 2021
Chonova, Teofana; Keck, Francois; Bouchez, Agnès; Rimet, Frederic, 2020, "A ready-to-use database for DADA2: Diat.barcode_rbcL_263bp_DADA2 based on Diat.barcode v9", https://doi.org/10.15454/QBLSXP, Portail Data INRAE, V3
This database is an adaptation for DADA2 of Diat.barcode v9. Length of sequences is 263 bp ------------------------- Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, Davi...
May 12, 2021 - UMR IGEPP
Solenn Stoeckel, 2021, "The discernible and hidden effects of clonality on the genotypic and genetic states of populations: improving our estimation of clonal rates", https://doi.org/10.15454/FEQ1Z6, Portail Data INRAE, V1
Partial clonality is widespread across the tree of life, but most population genetics models are designed for exclusively clonal or sexual organisms. This gap hampers our understanding of the influence of clonality on evolutionary trajectories and the interpretation of population...
Apr 23, 2021
Plaza Onate, Florian; Ghozlane, Amine; Almeida, Mathieu, 2021, "An updated catalog of genes and species of the pig gut microbiota", https://doi.org/10.15454/OPAULL, Portail Data INRAE, V1, UNF:6:Ggdc9+Ypa5HI+KYp/YYwqw== [fileUNF]
Dataset overview We built an updated catalog of 9.3M genes found in the pig gut microbiota. Co-abundant genes were binned in 1523 Metagenomic Species Pan-genomes (MSPs) for which we provide taxonomic labels and a phylogenetic tree. In addition, we reconstituted 7059 Metagenome-As...
Apr 16, 2021
Larue, Clement, 2021, "Intensive study site: INRAE chestnut germplasm collection (Domaine de la Grande Ferrade, Villenave d'Ornon)", https://doi.org/10.15454/GSJSWW, Portail Data INRAE, V7, UNF:6:iAR0+WJ5nZvJADvW/94RFQ== [fileUNF]
This intensive study plot is located in Villenave d’Ornon, near Bordeaux in southwestern France (44.788319 N, -0.577062 E). It includes the INRAE chestnut germplasm collection and all isolated trees located in the immediate surroundings (<1 km from the INRAE research site). The g...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa; Da Rocha, Martine; Danchin, Eienne, 2020, "TE-related genes: annotation, characterisation, and expression.", https://doi.org/10.15454/DLDJVF, Portail Data INRAE, V2, UNF:6:eKPs0JUt+cT1C/bqgPBVjg== [fileUNF]
This dataset contains the gene analysis workflow used to evaluate the genes expression and to find the genes potentially involved in the TEs transposition machinery. Also, it contains the gene annotation file (bed format), the proteome stem from (https://doi.org/10.1371/journal.p...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "TE polymorphisms detection and analysis", https://doi.org/10.15454/EWJCT8, Portail Data INRAE, V3, UNF:6:E+xGPf2dIik9HjdvU3Bv3A== [fileUNF]
This dataset contains i) output files from "Kozlowski D. 2020a. Transposable Elements prediction and annotation in the M. incognita genome. Portail Data INRAE [Internet]. Available from: https://doi.org/10.15454/EPTDOS", "Kozlowski D. 2020b. Transposable Elements prediction and a...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the M. incognita genome", https://doi.org/10.15454/EPTDOS, Portail Data INRAE, V3
This datasets contains all the essential files produced during the TE prediction, annotation, and post-processing in the M. incognita genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET c...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the C. elegans genome", https://doi.org/10.15454/LQCIW0, Portail Data INRAE, V2
This datasets contains all the essential files produced during the TE prediction, annotation, and post-processing in the C. elegans genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET con...
Mar 19, 2021 - Vocabulaires Ouverts
DipSO, 2021, "Thésaurus INRAE", https://doi.org/10.15454/J8GANU, Portail Data INRAE, V1
Thésaurus ouvert et partagé couvrant les domaines de recherche d’INRAE. Il sert de référentiel au sein de l’institut pour indexer et annoter des documents, pages web, descriptions d’activités, jeux de données, à des fins de recherche ou d’analyse de l’information. En savoir plus...
Mar 9, 2021
Larue, Clement, 2021, "Development of SNP markers for the identification of chestnut species, hybrids and varieties", https://doi.org/10.15454/XEMDLD, Portail Data INRAE, V2, UNF:6:eJQwJJ12X/74swiSKl9V2A== [fileUNF]
Three chestnut species (Castanea sativa, Castanea crenata and Castanea mollissima) and their hybrids have been massively planted worldwide for nut production. To better study and manage these trees, we identified nuclear single nucleotide polymorphism (SNP) markers using restrict...
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